Wall clock time and date at job start Mon Mar 30 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99423 * 2 1 4 4 H 1.48500 * 109.47287 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47288 * 30.00101 * 3 2 1 6 6 H 1.48502 * 109.46838 * 149.99712 * 3 2 1 7 7 C 1.37873 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00163 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00359 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47666 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47181 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47746 * 60.00068 * 9 7 2 24 24 H 1.09005 * 109.46991 * 299.99336 * 9 7 2 25 25 H 1.00907 * 111.00084 * 303.94496 * 10 9 7 26 26 H 1.09004 * 109.47302 * 59.98958 * 11 10 9 27 27 H 1.09009 * 109.47045 * 299.99548 * 11 10 9 28 28 H 1.08999 * 109.46920 * 59.99505 * 12 11 10 29 29 H 1.08993 * 109.46801 * 299.99687 * 12 11 10 30 30 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 31 31 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 32 32 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 33 33 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0010 11 6 5.4698 -2.6180 0.0022 12 6 5.9413 -4.0735 0.0027 13 6 7.4707 -4.1142 0.0032 14 6 7.9422 -5.5698 0.0031 15 8 9.3707 -5.6078 0.0042 16 6 9.9551 -6.8347 0.0037 17 6 11.3380 -6.9455 0.0042 18 6 11.9298 -8.1938 0.0042 19 6 11.1450 -9.3322 0.0031 20 6 9.7665 -9.2245 0.0030 21 6 9.1700 -7.9785 0.0031 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6798 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6257 -3.0953 0.7822 26 1 5.8461 -2.1142 0.8926 27 1 5.8475 -2.1137 -0.8874 28 1 5.5650 -4.5776 -0.8876 29 1 5.5638 -4.5774 0.8924 30 1 7.8473 -3.6101 0.8932 31 1 7.8479 -3.6104 -0.8868 32 1 7.5656 -6.0735 -0.8872 33 1 7.5650 -6.0740 0.8928 34 1 11.9515 -6.0566 0.0002 35 1 13.0063 -8.2806 0.0042 36 1 11.6096 -10.3071 0.0027 37 1 9.1558 -10.1151 0.0026 38 1 8.0932 -7.8948 0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309559802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:38 Heat of formation + Delta-G solvation = -48.776602 kcal Electronic energy + Delta-G solvation = -16631.812000 eV Core-core repulsion = 13858.986879 eV Total energy + Delta-G solvation = -2772.825121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03952 -38.55714 -37.68562 -35.32476 -34.05724 -31.95351 -31.03086 -29.98974 -27.66858 -24.58930 -23.46296 -23.04926 -22.48413 -21.90541 -19.18560 -18.93440 -17.44537 -17.06791 -16.79089 -16.65962 -16.25841 -15.58498 -15.24256 -15.21526 -14.71277 -14.45508 -14.32575 -13.96515 -13.81416 -13.22299 -13.08480 -12.83800 -12.57410 -12.48681 -12.28193 -12.06424 -11.85348 -11.79697 -11.66217 -11.48283 -11.45372 -10.82477 -9.94773 -9.17097 -9.16364 -8.31848 -6.36789 0.39813 0.49921 1.34464 1.35781 1.46931 2.17934 2.32755 2.85626 3.01904 3.49846 3.82659 3.89948 3.95816 4.03541 4.24154 4.25578 4.30495 4.38500 4.51576 4.54758 4.60234 4.70104 4.72542 4.81191 4.85974 4.93916 5.08017 5.09752 5.27073 5.33519 5.39039 5.49420 5.50576 5.61062 5.88335 5.93807 6.46206 6.53739 6.64179 6.75373 7.28386 8.84747 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.070278 B = 0.002595 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.320457 B =10787.386045 C =11147.336095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.173 3.827 10 N -0.693 5.693 11 C 0.056 3.944 12 C -0.101 4.101 13 C -0.108 4.108 14 C 0.062 3.938 15 O -0.333 6.333 16 C 0.107 3.893 17 C -0.173 4.173 18 C -0.084 4.084 19 C -0.166 4.166 20 C -0.088 4.088 21 C -0.223 4.223 22 H 0.268 0.732 23 H -0.013 1.013 24 H 0.023 0.977 25 H 0.338 0.662 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.254 -16.660 0.959 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.056 0.944 9 C 0.044 3.956 10 N -0.323 5.323 11 C -0.073 4.073 12 C -0.139 4.139 13 C -0.146 4.146 14 C -0.013 4.013 15 O -0.248 6.248 16 C 0.062 3.938 17 C -0.191 4.191 18 C -0.102 4.102 19 C -0.184 4.184 20 C -0.106 4.106 21 C -0.241 4.241 22 H 0.077 0.923 23 H 0.005 0.995 24 H 0.041 0.959 25 H 0.155 0.845 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.132 -16.416 0.272 30.020 hybrid contribution -0.388 1.020 0.846 1.381 sum 24.744 -15.396 1.118 29.164 Atomic orbital electron populations 1.70051 1.08151 1.28295 1.52191 1.25918 0.95708 1.03426 0.94108 0.85628 0.79236 0.78241 0.79279 1.19020 1.20496 1.17513 1.21354 0.91415 0.93500 1.50611 0.94385 1.19758 0.93727 0.87348 0.94737 1.60386 1.07417 1.14629 1.49910 1.22005 0.87736 0.97434 1.00161 1.21326 0.93720 0.95615 1.03259 1.21387 0.94937 0.94559 1.03719 1.22889 0.77350 0.98795 1.02262 1.86019 1.23149 1.26929 1.88693 1.19369 0.93311 0.84247 0.96912 1.20735 0.91563 0.99653 1.07189 1.21321 1.01312 0.90999 0.96552 1.21446 0.93764 0.99739 1.03411 1.21316 0.95688 0.97085 0.96493 1.21529 1.00732 0.92861 1.09019 0.92288 0.99523 0.95852 0.84495 0.95610 0.91651 0.90935 0.91069 0.90874 0.90849 0.91189 0.91122 0.84928 0.82974 0.83529 0.83771 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.01 0.35 5.47 84.65 0.46 0.82 16 3 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.53 -31.24 9.87 25.60 0.25 -30.98 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 9 C 0.17 8.40 4.51 85.55 0.39 8.78 16 10 N -0.69 -28.29 6.49 -517.92 -3.36 -31.65 16 11 C 0.06 1.74 5.68 86.30 0.49 2.23 16 12 C -0.10 -2.40 5.47 30.59 0.17 -2.23 16 13 C -0.11 -2.20 5.58 30.59 0.17 -2.03 16 14 C 0.06 1.19 4.74 71.98 0.34 1.53 16 15 O -0.33 -7.68 10.14 -92.40 -0.94 -8.62 16 16 C 0.11 2.28 6.69 22.51 0.15 2.43 16 17 C -0.17 -3.21 9.99 22.37 0.22 -2.98 16 18 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 19 C -0.17 -2.20 10.04 22.28 0.22 -1.98 16 20 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 21 C -0.22 -4.10 9.04 22.36 0.20 -3.90 16 22 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 23 H -0.01 -0.61 7.20 -2.39 -0.02 -0.63 16 24 H 0.02 1.13 7.57 -2.38 -0.02 1.11 16 25 H 0.34 13.35 8.72 -89.69 -0.78 12.56 16 26 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 33 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 34 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.14 2.17 6.30 -2.91 -0.02 2.15 16 Total: -1.00 -68.65 318.54 1.59 -67.06 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.19 Total: 16.61 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.52 Total: -30.38 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.06 Total: -90.98 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.62 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -68.65 1.59 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309559802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.278 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds