Wall clock time and date at job start Mon Mar 30 2020 07:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48505 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47633 * 300.00194 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00399 * 3 2 1 7 7 C 1.38805 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00085 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46596 * 324.99853 * 10 9 7 12 12 C 1.52997 * 109.47473 * 84.99951 * 10 9 7 13 13 C 1.52999 * 109.46991 * 59.99688 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.47249 * 205.00255 * 10 9 7 17 17 H 1.08996 * 109.47452 * 179.97438 * 16 10 9 18 18 C 1.52997 * 109.47131 * 59.99486 * 16 10 9 19 19 C 1.50701 * 109.47348 * 175.00237 * 18 16 10 20 20 C 1.34513 * 125.78927 * 90.00051 * 19 18 16 21 21 C 1.41386 * 106.83853 * 180.02562 * 20 19 18 22 22 C 1.34510 * 106.84452 * 359.97438 * 21 20 19 23 23 O 1.34306 * 108.41902 * 359.74180 * 22 21 20 24 24 H 0.97010 * 119.99805 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99943 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47153 * 300.00243 * 12 10 9 27 27 H 1.08993 * 109.47194 * 180.02562 * 12 10 9 28 28 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 29 29 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 31 31 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 33 33 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 34 34 H 1.09001 * 109.47630 * 295.00237 * 18 16 10 35 35 H 1.09002 * 109.47196 * 55.00332 * 18 16 10 36 36 H 1.07997 * 126.58374 * 359.96133 * 20 19 18 37 37 H 1.08008 * 126.57687 * 180.02562 * 21 20 19 38 38 H 1.07999 * 125.79618 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5504 -0.5900 12 6 2.4219 -4.0356 1.4364 13 6 1.1437 -4.1847 2.2638 14 6 0.2664 -5.2801 1.6541 15 6 -0.0975 -4.9012 0.2172 16 6 1.1809 -4.7521 -0.6102 17 1 1.7260 -5.6959 -0.6106 18 6 0.8170 -4.3732 -2.0472 19 6 0.0570 -5.5057 -2.6882 20 6 -1.2784 -5.6659 -2.6715 21 6 -1.5576 -6.8525 -3.3877 22 6 -0.3762 -7.3462 -3.7997 23 8 0.5978 -6.5231 -3.3784 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 3.0469 -3.2553 1.8708 27 1 2.9673 -4.9793 1.4363 28 1 0.5986 -3.2408 2.2639 29 1 1.4029 -4.4542 3.2877 30 1 0.8115 -6.2240 1.6541 31 1 -0.6441 -5.3867 2.2438 32 1 -0.7228 -5.6814 -0.2170 33 1 -0.6424 -3.9573 0.2173 34 1 0.1964 -3.4771 -2.0407 35 1 1.7279 -4.1802 -2.6138 36 1 -1.9990 -5.0138 -2.2004 37 1 -2.5326 -7.2800 -3.5698 38 1 -0.2351 -8.2486 -4.3760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309630139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:24 Heat of formation + Delta-G solvation = 2.521679 kcal Electronic energy + Delta-G solvation = -18755.970787 eV Core-core repulsion = 15985.370126 eV Total energy + Delta-G solvation = -2770.600661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.33295 -38.62974 -33.59748 -33.27771 -32.45199 -30.91912 -29.07902 -28.14955 -25.40861 -23.55094 -21.89486 -21.32261 -21.19099 -19.90332 -18.30972 -17.24875 -16.96218 -15.81905 -14.74894 -14.69565 -14.35663 -14.00691 -13.69262 -13.50862 -12.82180 -12.60245 -12.54767 -12.43037 -12.06093 -11.62822 -11.41065 -11.33561 -11.03649 -10.82445 -10.72242 -10.37609 -10.12388 -10.00629 -9.80414 -9.69054 -9.45226 -9.27958 -8.84285 -8.14542 -6.89815 -5.74232 -3.01281 1.97964 2.85530 3.25823 3.44624 3.50990 3.52594 4.62204 4.92724 5.18170 5.24288 5.29635 5.31966 5.42425 5.63340 5.74237 5.79218 5.89463 5.93470 6.02206 6.07183 6.08971 6.17721 6.25591 6.27478 6.34045 6.43328 6.45103 6.56657 6.63331 6.75243 6.83555 6.91297 6.96044 7.08365 7.19217 7.41584 7.74602 8.45331 9.56909 10.15327 10.50652 11.48626 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.006519 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.156331 B = 4294.386438 C = 4923.097539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.719 5.719 10 C 0.180 3.820 11 H 0.047 0.953 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.082 4.082 17 H 0.064 0.936 18 C -0.034 4.034 19 C 0.012 3.988 20 C -0.220 4.220 21 C -0.211 4.211 22 C -0.062 4.062 23 O -0.179 6.179 24 H 0.253 0.747 25 H 0.384 0.616 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -13.882 -2.942 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.070 3.930 11 H 0.065 0.935 12 C -0.173 4.173 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.152 4.152 16 C -0.102 4.102 17 H 0.083 0.917 18 C -0.071 4.071 19 C -0.038 4.038 20 C -0.239 4.239 21 C -0.231 4.231 22 C -0.129 4.129 23 O -0.076 6.076 24 H 0.063 0.937 25 H 0.220 0.780 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.376 -13.769 -3.007 14.098 hybrid contribution -0.184 0.853 0.021 0.873 sum -0.561 -12.916 -2.986 13.268 Atomic orbital electron populations 1.69660 1.05019 1.25392 1.58210 1.24681 0.95445 0.97481 1.03359 0.86180 0.78812 0.84496 0.77091 1.20671 1.22028 1.22053 1.19288 0.91006 0.84180 1.41924 0.91261 1.42488 1.05752 0.99483 1.88412 1.20225 0.93767 0.86075 0.92925 0.93496 1.22114 0.96906 0.99301 0.98950 1.21403 0.97017 0.99459 0.97116 1.21470 0.99031 0.98290 0.96199 1.21601 0.97121 1.01751 0.94740 1.21358 0.97155 0.98971 0.92676 0.91738 1.20301 1.00165 0.92127 0.94531 1.22893 0.93037 0.90879 0.97003 1.21605 0.95411 1.00325 1.06534 1.21794 0.98835 0.98298 1.04126 1.23871 0.86277 0.97655 1.05099 1.84023 1.37213 1.30690 1.55657 0.93676 0.78018 0.92227 0.94052 0.90594 0.93882 0.93157 0.92969 0.92603 0.91040 0.87508 0.90414 0.83562 0.83988 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.23 -6.20 9.93 -15.06 -0.15 -6.35 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.72 -16.84 3.66 -53.43 -0.20 -17.03 16 10 C 0.18 3.46 2.54 -67.93 -0.17 3.28 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.37 5.61 -26.73 -0.15 -2.52 16 13 C -0.11 -1.94 5.77 -26.73 -0.15 -2.09 16 14 C -0.11 -1.73 5.92 -26.73 -0.16 -1.88 16 15 C -0.11 -1.85 4.74 -26.73 -0.13 -1.98 16 16 C -0.08 -1.36 1.97 -90.62 -0.18 -1.54 16 17 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.03 -0.57 4.99 -27.88 -0.14 -0.71 16 19 C 0.01 0.19 6.05 -35.62 -0.22 -0.03 16 20 C -0.22 -3.27 9.40 -39.70 -0.37 -3.64 16 21 C -0.21 -2.72 10.91 -39.70 -0.43 -3.15 16 22 C -0.06 -0.76 12.09 29.41 0.36 -0.41 16 23 O -0.18 -2.73 10.65 5.69 0.06 -2.67 16 24 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.38 9.54 5.86 -40.82 -0.24 9.30 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.55 7.60 -51.93 -0.39 1.15 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.85 6.41 -51.93 -0.33 0.52 16 33 H 0.07 1.31 6.51 -51.93 -0.34 0.97 16 34 H 0.11 2.00 7.61 -51.93 -0.40 1.60 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -28.98 303.05 -7.75 -36.73 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.89 Total: 9.50 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.99 Total: -21.50 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.53 Total: -43.74 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.06 Total: -2.67 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.98 -7.75 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.251 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds