Wall clock time and date at job start Mon Mar 30 2020 07:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48505 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47633 * 300.00194 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00399 * 3 2 1 7 7 C 1.38805 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00085 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46596 * 324.99853 * 10 9 7 12 12 C 1.52997 * 109.47473 * 84.99951 * 10 9 7 13 13 C 1.52999 * 109.46991 * 59.99688 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.47249 * 205.00255 * 10 9 7 17 17 H 1.08996 * 109.47452 * 179.97438 * 16 10 9 18 18 C 1.52997 * 109.47131 * 59.99486 * 16 10 9 19 19 C 1.50701 * 109.47348 * 175.00237 * 18 16 10 20 20 C 1.34513 * 125.78927 * 90.00051 * 19 18 16 21 21 C 1.41386 * 106.83853 * 180.02562 * 20 19 18 22 22 C 1.34510 * 106.84452 * 359.97438 * 21 20 19 23 23 O 1.34306 * 108.41902 * 359.74180 * 22 21 20 24 24 H 0.97010 * 119.99805 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99943 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47153 * 300.00243 * 12 10 9 27 27 H 1.08993 * 109.47194 * 180.02562 * 12 10 9 28 28 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 29 29 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 31 31 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 33 33 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 34 34 H 1.09001 * 109.47630 * 295.00237 * 18 16 10 35 35 H 1.09002 * 109.47196 * 55.00332 * 18 16 10 36 36 H 1.07997 * 126.58374 * 359.96133 * 20 19 18 37 37 H 1.08008 * 126.57687 * 180.02562 * 21 20 19 38 38 H 1.07999 * 125.79618 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5504 -0.5900 12 6 2.4219 -4.0356 1.4364 13 6 1.1437 -4.1847 2.2638 14 6 0.2664 -5.2801 1.6541 15 6 -0.0975 -4.9012 0.2172 16 6 1.1809 -4.7521 -0.6102 17 1 1.7260 -5.6959 -0.6106 18 6 0.8170 -4.3732 -2.0472 19 6 0.0570 -5.5057 -2.6882 20 6 -1.2784 -5.6659 -2.6715 21 6 -1.5576 -6.8525 -3.3877 22 6 -0.3762 -7.3462 -3.7997 23 8 0.5978 -6.5231 -3.3784 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 3.0469 -3.2553 1.8708 27 1 2.9673 -4.9793 1.4363 28 1 0.5986 -3.2408 2.2639 29 1 1.4029 -4.4542 3.2877 30 1 0.8115 -6.2240 1.6541 31 1 -0.6441 -5.3867 2.2438 32 1 -0.7228 -5.6814 -0.2170 33 1 -0.6424 -3.9573 0.2173 34 1 0.1964 -3.4771 -2.0407 35 1 1.7279 -4.1802 -2.6138 36 1 -1.9990 -5.0138 -2.2004 37 1 -2.5326 -7.2800 -3.5698 38 1 -0.2351 -8.2486 -4.3760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309630139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:24 Heat of formation + Delta-G solvation = -12.724691 kcal Electronic energy + Delta-G solvation = -18756.631919 eV Core-core repulsion = 15985.370126 eV Total energy + Delta-G solvation = -2771.261793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.42564 -40.09099 -35.45480 -34.57575 -33.58553 -32.72109 -30.39453 -29.73297 -26.76020 -25.50531 -23.22876 -22.55778 -22.43215 -21.07018 -19.85348 -19.16459 -18.05077 -17.02570 -16.52981 -16.17391 -15.76931 -15.45481 -15.13918 -15.06071 -14.52318 -13.86771 -13.69415 -13.64981 -13.33139 -13.15659 -12.96927 -12.88064 -12.75867 -12.45075 -12.33407 -12.07100 -11.86887 -11.65284 -11.31008 -11.13792 -10.79758 -10.75368 -10.65808 -9.25981 -8.87672 -7.87834 -5.12693 0.90044 1.48181 1.49078 1.57993 1.78803 2.19380 2.60366 3.45947 3.76704 3.83518 4.00149 4.07718 4.18622 4.23288 4.28933 4.43228 4.53360 4.56464 4.66880 4.73078 4.81078 4.87939 4.96992 5.02502 5.08422 5.12876 5.16545 5.23464 5.31993 5.43213 5.47907 5.50453 5.57836 5.64728 5.69982 5.76103 6.31954 6.35580 7.42586 8.21286 8.45158 9.35974 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.006519 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.156331 B = 4294.386438 C = 4923.097539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.225 4.225 8 H 0.072 0.928 9 N -0.724 5.724 10 C 0.173 3.827 11 H 0.041 0.959 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.107 4.107 15 C -0.107 4.107 16 C -0.071 4.071 17 H 0.084 0.916 18 C -0.026 4.026 19 C -0.012 4.012 20 C -0.226 4.226 21 C -0.223 4.223 22 C -0.048 4.048 23 O -0.193 6.193 24 H 0.247 0.753 25 H 0.376 0.624 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -16.379 -3.226 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.226 1.226 7 C -0.358 4.358 8 H 0.090 0.910 9 N -0.365 5.365 10 C 0.065 3.935 11 H 0.059 0.941 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.090 4.090 17 H 0.102 0.898 18 C -0.063 4.063 19 C -0.061 4.061 20 C -0.245 4.245 21 C -0.242 4.242 22 C -0.115 4.115 23 O -0.090 6.090 24 H 0.056 0.944 25 H 0.210 0.790 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.233 -16.299 -3.287 16.629 hybrid contribution -0.355 1.513 0.060 1.555 sum -0.121 -14.786 -3.227 15.135 Atomic orbital electron populations 1.69808 1.06362 1.25494 1.60437 1.25370 0.96193 1.00458 1.04682 0.85220 0.78308 0.80821 0.76342 1.19320 1.22500 1.22581 1.19621 0.91263 0.85394 1.39491 0.91046 1.42597 1.05459 1.00291 1.88202 1.20449 0.93652 0.85262 0.94142 0.94098 1.22026 0.97229 1.00075 0.97441 1.21344 0.96548 0.98394 0.98385 1.21449 0.99442 0.98307 0.95222 1.21512 0.96710 1.00634 0.95625 1.21244 0.96981 0.98428 0.92357 0.89810 1.20027 0.99432 0.91900 0.94950 1.22564 0.93180 0.91539 0.98862 1.21783 0.95089 1.01132 1.06471 1.22116 1.00458 0.97581 1.04009 1.24776 0.85413 0.97751 1.03543 1.84009 1.38265 1.30886 1.55804 0.94375 0.79045 0.94274 0.90942 0.94536 0.91992 0.90804 0.91830 0.91350 0.93986 0.90442 0.90974 0.84009 0.81447 0.74429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.96 46.46 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.72 -34.91 3.66 -322.95 -1.18 -36.10 16 10 C 0.17 6.64 2.54 44.99 0.11 6.76 16 11 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 12 C -0.13 -4.42 5.61 30.59 0.17 -4.25 16 13 C -0.11 -3.65 5.77 30.60 0.18 -3.48 16 14 C -0.11 -3.05 5.92 30.60 0.18 -2.87 16 15 C -0.11 -3.39 4.74 30.59 0.14 -3.25 16 16 C -0.07 -2.30 1.97 -10.79 -0.02 -2.32 16 17 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 18 C -0.03 -0.87 4.99 29.85 0.15 -0.72 16 19 C -0.01 -0.36 6.05 24.83 0.15 -0.21 16 20 C -0.23 -6.51 9.40 22.19 0.21 -6.30 16 21 C -0.22 -5.13 10.91 22.19 0.24 -4.89 16 22 C -0.05 -1.03 12.09 66.97 0.81 -0.22 16 23 O -0.19 -5.47 10.65 -2.57 -0.03 -5.50 16 24 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 25 H 0.38 19.51 5.86 -92.71 -0.54 18.97 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.00 6.41 -2.39 -0.02 1.98 16 33 H 0.04 1.58 6.51 -2.39 -0.02 1.57 16 34 H 0.08 3.06 7.61 -2.39 -0.02 3.05 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.43 303.05 5.22 -58.21 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.49 Total: 30.52 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.63 Total: -36.97 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -0.90 Total: -94.74 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.03 Total: -5.50 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -63.43 5.22 -58.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.485 kcal (2) G-P(sol) polarization free energy of solvation -63.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds