Wall clock time and date at job start Mon Mar 30 2020 07:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86796 * 120.00322 * 2 1 4 4 H 1.48499 * 109.47190 * 270.00061 * 3 2 1 5 5 H 1.48506 * 109.47243 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.47531 * 149.99671 * 3 2 1 7 7 C 1.38820 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99414 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00090 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99499 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47511 * 34.99702 * 10 9 7 12 12 C 1.52998 * 109.46748 * 274.99412 * 10 9 7 13 13 C 1.53004 * 109.47568 * 300.00167 * 12 10 9 14 14 C 1.52999 * 109.47282 * 300.00423 * 13 12 10 15 15 C 1.52998 * 109.47165 * 59.99329 * 14 13 12 16 16 C 1.52999 * 109.46747 * 154.99819 * 10 9 7 17 17 H 1.09006 * 109.47182 * 179.97438 * 16 10 9 18 18 C 1.53000 * 109.47472 * 299.99538 * 16 10 9 19 19 C 1.50695 * 109.47313 * 185.00344 * 18 16 10 20 20 C 1.34515 * 125.79319 * 90.00014 * 19 18 16 21 21 C 1.41376 * 106.84242 * 179.73499 * 20 19 18 22 22 C 1.34516 * 106.84089 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42070 * 0.02562 * 22 21 20 24 24 H 0.97003 * 119.99760 * 0.02562 * 1 2 3 25 25 H 0.96993 * 119.99852 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.47115 * 180.02562 * 12 10 9 27 27 H 1.09002 * 109.47294 * 60.00386 * 12 10 9 28 28 H 1.08997 * 109.47323 * 179.97438 * 13 12 10 29 29 H 1.09006 * 109.46549 * 60.00244 * 13 12 10 30 30 H 1.09002 * 109.46775 * 300.00059 * 14 13 12 31 31 H 1.08992 * 109.47210 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47294 * 180.02562 * 15 14 13 33 33 H 1.09007 * 109.47115 * 60.00521 * 15 14 13 34 34 H 1.09004 * 109.46990 * 65.00091 * 18 16 10 35 35 H 1.09003 * 109.46686 * 305.00233 * 18 16 10 36 36 H 1.08003 * 126.57278 * 359.76766 * 20 19 18 37 37 H 1.08004 * 126.57888 * 180.02562 * 21 20 19 38 38 H 1.08002 * 125.78796 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5650 -3.2063 -0.5886 12 6 4.2577 -2.9756 1.4380 13 6 5.0258 -1.9433 2.2659 14 6 6.4132 -1.7312 1.6568 15 6 6.2675 -1.2265 0.2199 16 6 5.4995 -2.2588 -0.6080 17 1 6.0447 -3.2027 -0.6076 18 6 5.3539 -1.7540 -2.0450 19 6 6.7149 -1.6622 -2.6855 20 6 7.3294 -2.6426 -3.3714 21 6 8.5748 -2.1263 -3.7970 22 6 8.6471 -0.8613 -3.3453 23 8 7.5183 -0.5859 -2.6720 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3621 0.0007 26 1 4.8031 -3.9195 1.4382 27 1 3.2693 -3.1267 1.8720 28 1 5.1291 -2.3027 3.2897 29 1 4.4807 -0.9993 2.2659 30 1 6.9581 -2.6752 1.6568 31 1 6.9601 -0.9955 2.2463 32 1 7.2560 -1.0758 -0.2143 33 1 5.7225 -0.2824 0.2198 34 1 4.8881 -0.7685 -2.0385 35 1 4.7315 -2.4464 -2.6120 36 1 6.9449 -3.6339 -3.5609 37 1 9.3243 -2.6475 -4.3741 38 1 9.4730 -0.1824 -3.4982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309630141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:28 Heat of formation + Delta-G solvation = 6.447568 kcal Electronic energy + Delta-G solvation = -18864.024550 eV Core-core repulsion = 16093.594129 eV Total energy + Delta-G solvation = -2770.430422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44092 -38.80006 -33.65775 -33.41796 -32.59048 -31.16536 -29.34063 -28.58965 -25.50533 -23.25887 -21.98343 -21.44486 -21.37173 -19.99638 -18.33360 -17.79964 -17.11734 -15.94942 -14.88586 -14.73343 -14.56579 -14.06292 -13.73193 -13.48080 -13.08870 -12.71327 -12.62508 -12.55597 -12.27003 -11.82835 -11.59510 -11.50400 -11.27423 -10.91023 -10.77870 -10.42756 -10.26352 -10.02844 -9.97653 -9.77542 -9.49441 -9.42480 -8.87333 -8.27105 -7.21268 -5.74449 -3.08459 1.87975 2.72853 3.16309 3.38361 3.41508 3.46918 4.61116 4.80400 5.01985 5.11245 5.14068 5.19974 5.29190 5.49656 5.56000 5.58499 5.73633 5.80380 5.87086 5.90140 5.94234 6.04042 6.08773 6.12695 6.19155 6.29881 6.31676 6.36848 6.51413 6.59432 6.68109 6.76463 6.83440 6.95652 7.03382 7.30823 8.03538 8.45291 9.24642 9.97329 10.17924 11.44270 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.007477 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.847150 B = 3743.835703 C = 4289.277821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.090 0.910 9 N -0.744 5.744 10 C 0.186 3.814 11 H 0.057 0.943 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.086 4.086 17 H 0.072 0.928 18 C -0.037 4.037 19 C 0.014 3.986 20 C -0.226 4.226 21 C -0.213 4.213 22 C -0.058 4.058 23 O -0.174 6.174 24 H 0.258 0.742 25 H 0.361 0.639 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 -4.578 -3.142 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.190 4.190 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.077 3.923 11 H 0.075 0.925 12 C -0.173 4.173 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.106 4.106 17 H 0.090 0.910 18 C -0.074 4.074 19 C -0.037 4.037 20 C -0.245 4.245 21 C -0.232 4.232 22 C -0.125 4.125 23 O -0.070 6.070 24 H 0.068 0.932 25 H 0.195 0.805 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 16.820 -4.364 -3.010 17.636 hybrid contribution 0.767 1.117 -0.138 1.362 sum 17.587 -3.248 -3.148 18.159 Atomic orbital electron populations 1.69689 1.05068 1.25662 1.57923 1.24623 0.95127 0.96950 1.02348 0.86679 0.79332 0.85472 0.77851 1.21102 1.21822 1.20298 1.19078 0.80697 0.94566 1.42389 0.89204 1.42854 1.03802 1.02001 1.90138 1.20187 0.89462 0.89332 0.93351 0.92503 1.22096 0.99937 0.96764 0.98485 1.21418 0.95181 1.00945 0.97580 1.21491 0.97563 1.00179 0.95903 1.21561 0.99401 0.98960 0.95112 1.21458 0.97864 0.98657 0.92579 0.90981 1.20299 0.87327 1.04464 0.95342 1.22823 0.94691 0.85097 1.01044 1.21550 0.96385 1.00991 1.05576 1.21768 0.99365 0.95823 1.06222 1.23925 0.90219 0.98211 1.00152 1.84070 1.25386 1.38324 1.59261 0.93163 0.80477 0.93608 0.91655 0.93428 0.91185 0.92706 0.92918 0.92701 0.91876 0.89422 0.88575 0.83729 0.83944 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.13 13.97 55.49 0.78 -28.36 16 2 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.74 -16.67 3.46 -53.43 -0.19 -16.85 16 10 C 0.19 3.40 2.54 -67.93 -0.17 3.23 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 13 C -0.11 -1.86 5.77 -26.73 -0.15 -2.02 16 14 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 15 C -0.11 -1.75 4.85 -26.73 -0.13 -1.88 16 16 C -0.09 -1.33 1.97 -90.62 -0.18 -1.51 16 17 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.04 -0.58 4.99 -27.89 -0.14 -0.72 16 19 C 0.01 0.20 5.73 -35.63 -0.20 0.00 16 20 C -0.23 -3.00 10.81 -39.71 -0.43 -3.43 16 21 C -0.21 -2.52 10.91 -39.70 -0.43 -2.95 16 22 C -0.06 -0.68 12.09 29.42 0.36 -0.33 16 23 O -0.17 -2.60 10.08 5.72 0.06 -2.55 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.36 8.14 3.72 -40.82 -0.15 7.99 16 26 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.82 6.92 -51.93 -0.36 0.46 16 33 H 0.06 1.11 6.51 -51.92 -0.34 0.77 16 34 H 0.09 1.55 7.61 -51.93 -0.40 1.15 16 35 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -30.52 301.05 -7.45 -37.97 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.88 Total: 8.31 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.05 Total: -20.39 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.59 Total: -45.21 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.06 Total: -2.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.52 -7.45 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.421 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds