Wall clock time and date at job start Mon Mar 30 2020 07:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86796 * 120.00322 * 2 1 4 4 H 1.48499 * 109.47190 * 270.00061 * 3 2 1 5 5 H 1.48506 * 109.47243 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.47531 * 149.99671 * 3 2 1 7 7 C 1.38820 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99414 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00090 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99499 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47511 * 34.99702 * 10 9 7 12 12 C 1.52998 * 109.46748 * 274.99412 * 10 9 7 13 13 C 1.53004 * 109.47568 * 300.00167 * 12 10 9 14 14 C 1.52999 * 109.47282 * 300.00423 * 13 12 10 15 15 C 1.52998 * 109.47165 * 59.99329 * 14 13 12 16 16 C 1.52999 * 109.46747 * 154.99819 * 10 9 7 17 17 H 1.09006 * 109.47182 * 179.97438 * 16 10 9 18 18 C 1.53000 * 109.47472 * 299.99538 * 16 10 9 19 19 C 1.50695 * 109.47313 * 185.00344 * 18 16 10 20 20 C 1.34515 * 125.79319 * 90.00014 * 19 18 16 21 21 C 1.41376 * 106.84242 * 179.73499 * 20 19 18 22 22 C 1.34516 * 106.84089 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42070 * 0.02562 * 22 21 20 24 24 H 0.97003 * 119.99760 * 0.02562 * 1 2 3 25 25 H 0.96993 * 119.99852 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.47115 * 180.02562 * 12 10 9 27 27 H 1.09002 * 109.47294 * 60.00386 * 12 10 9 28 28 H 1.08997 * 109.47323 * 179.97438 * 13 12 10 29 29 H 1.09006 * 109.46549 * 60.00244 * 13 12 10 30 30 H 1.09002 * 109.46775 * 300.00059 * 14 13 12 31 31 H 1.08992 * 109.47210 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47294 * 180.02562 * 15 14 13 33 33 H 1.09007 * 109.47115 * 60.00521 * 15 14 13 34 34 H 1.09004 * 109.46990 * 65.00091 * 18 16 10 35 35 H 1.09003 * 109.46686 * 305.00233 * 18 16 10 36 36 H 1.08003 * 126.57278 * 359.76766 * 20 19 18 37 37 H 1.08004 * 126.57888 * 180.02562 * 21 20 19 38 38 H 1.08002 * 125.78796 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5650 -3.2063 -0.5886 12 6 4.2577 -2.9756 1.4380 13 6 5.0258 -1.9433 2.2659 14 6 6.4132 -1.7312 1.6568 15 6 6.2675 -1.2265 0.2199 16 6 5.4995 -2.2588 -0.6080 17 1 6.0447 -3.2027 -0.6076 18 6 5.3539 -1.7540 -2.0450 19 6 6.7149 -1.6622 -2.6855 20 6 7.3294 -2.6426 -3.3714 21 6 8.5748 -2.1263 -3.7970 22 6 8.6471 -0.8613 -3.3453 23 8 7.5183 -0.5859 -2.6720 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3621 0.0007 26 1 4.8031 -3.9195 1.4382 27 1 3.2693 -3.1267 1.8720 28 1 5.1291 -2.3027 3.2897 29 1 4.4807 -0.9993 2.2659 30 1 6.9581 -2.6752 1.6568 31 1 6.9601 -0.9955 2.2463 32 1 7.2560 -1.0758 -0.2143 33 1 5.7225 -0.2824 0.2198 34 1 4.8881 -0.7685 -2.0385 35 1 4.7315 -2.4464 -2.6120 36 1 6.9449 -3.6339 -3.5609 37 1 9.3243 -2.6475 -4.3741 38 1 9.4730 -0.1824 -3.4982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309630141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:28 Heat of formation + Delta-G solvation = -10.677277 kcal Electronic energy + Delta-G solvation = -18864.767139 eV Core-core repulsion = 16093.594129 eV Total energy + Delta-G solvation = -2771.173011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43159 -40.19306 -35.53677 -34.58941 -33.60872 -33.09635 -30.63522 -30.01702 -26.73202 -25.19282 -23.28232 -22.62769 -22.46654 -21.06022 -19.84371 -19.76911 -18.09494 -17.08004 -16.59923 -16.13919 -15.90517 -15.67413 -15.07043 -14.78806 -14.59171 -14.22032 -13.97166 -13.64828 -13.48913 -13.19439 -13.04247 -12.88748 -12.79758 -12.60392 -12.29848 -12.10290 -11.89995 -11.67689 -11.37628 -11.24093 -10.90304 -10.75373 -10.71578 -9.32619 -9.16296 -7.98838 -5.28147 0.89716 1.35483 1.36501 1.43402 1.79161 2.21138 2.48697 3.33248 3.64874 3.71198 3.93640 3.96805 4.06245 4.23207 4.26301 4.35425 4.52085 4.53344 4.62679 4.66242 4.73146 4.82633 4.92934 5.01553 5.04730 5.09007 5.14161 5.18720 5.30420 5.36810 5.42981 5.44627 5.60145 5.64549 5.72263 5.85248 6.26646 6.32755 7.13652 7.92344 8.10293 9.23467 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.007477 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.847150 B = 3743.835703 C = 4289.277821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.062 4.062 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.257 1.257 7 C -0.212 4.212 8 H 0.060 0.940 9 N -0.743 5.743 10 C 0.178 3.822 11 H 0.049 0.951 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.074 4.074 17 H 0.097 0.903 18 C -0.033 4.033 19 C -0.014 4.014 20 C -0.223 4.223 21 C -0.220 4.220 22 C -0.055 4.055 23 O -0.197 6.197 24 H 0.254 0.746 25 H 0.363 0.637 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.771 -5.159 -3.392 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.253 4.253 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.182 1.182 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.387 5.387 10 C 0.070 3.930 11 H 0.067 0.933 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.093 4.093 17 H 0.115 0.885 18 C -0.070 4.070 19 C -0.064 4.064 20 C -0.242 4.242 21 C -0.239 4.239 22 C -0.122 4.122 23 O -0.094 6.094 24 H 0.063 0.937 25 H 0.197 0.803 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.176 0.824 37 H 0.187 0.813 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 20.503 -4.980 -3.257 21.350 hybrid contribution -0.301 1.170 -0.108 1.213 sum 20.203 -3.810 -3.366 20.833 Atomic orbital electron populations 1.69857 1.06900 1.26182 1.60814 1.25304 0.95850 1.00452 1.03743 0.85653 0.78689 0.81036 0.77913 1.20821 1.22539 1.18210 1.19051 0.82764 0.93182 1.39300 0.92169 1.42844 1.02115 1.03872 1.89903 1.20445 0.90802 0.87224 0.94537 0.93310 1.22012 0.99165 0.98583 0.97090 1.21394 0.95927 0.98945 0.98750 1.21468 0.96406 1.01719 0.94899 1.21519 0.99414 0.97705 0.96024 1.21349 0.95785 0.99899 0.92278 0.88489 1.20135 0.88319 1.02838 0.95712 1.22603 0.94728 0.85965 1.03096 1.21856 0.96812 1.01194 1.04316 1.22129 0.99362 0.96001 1.06431 1.24745 0.89820 0.99050 0.98571 1.84048 1.26435 1.38723 1.60173 0.93656 0.80303 0.90330 0.94481 0.91639 0.94525 0.90340 0.91690 0.91643 0.94410 0.92247 0.88478 0.82432 0.81313 0.75150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.71 13.97 21.65 0.30 -63.41 16 2 C -0.06 -3.70 5.50 84.87 0.47 -3.24 16 3 Si 0.94 46.62 27.74 68.60 1.90 48.52 16 4 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 7 C -0.21 -11.85 10.41 84.04 0.87 -10.97 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 N -0.74 -33.64 3.46 -322.94 -1.12 -34.75 16 10 C 0.18 6.38 2.54 44.99 0.11 6.50 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 C -0.13 -4.22 5.61 30.59 0.17 -4.05 16 13 C -0.11 -3.48 5.77 30.60 0.18 -3.30 16 14 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 15 C -0.11 -3.15 4.85 30.59 0.15 -3.00 16 16 C -0.07 -2.15 1.97 -10.79 -0.02 -2.17 16 17 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 18 C -0.03 -0.99 4.99 29.85 0.15 -0.84 16 19 C -0.01 -0.39 5.73 24.83 0.14 -0.25 16 20 C -0.22 -5.31 10.81 22.19 0.24 -5.07 16 21 C -0.22 -4.44 10.91 22.19 0.24 -4.19 16 22 C -0.06 -1.13 12.09 66.97 0.81 -0.32 16 23 O -0.20 -5.47 10.08 -2.45 -0.02 -5.50 16 24 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 25 H 0.36 16.34 3.72 -92.71 -0.35 16.00 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.37 7.60 -2.38 -0.02 1.35 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.78 6.92 -2.39 -0.02 1.76 16 33 H 0.04 1.28 6.51 -2.38 -0.02 1.26 16 34 H 0.06 2.11 7.61 -2.39 -0.02 2.09 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -67.79 301.05 5.39 -62.41 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.63 Total: 26.23 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 3.69 Total: -33.50 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -0.82 Total: -98.16 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.02 Total: -5.50 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Total: -67.79 5.39 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.729 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds