Wall clock time and date at job start Mon Mar 30 2020 07:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48504 * 109.46928 * 239.99935 * 3 2 1 5 5 H 1.48507 * 109.46770 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47250 * 119.99768 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00072 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46687 * 34.98893 * 10 9 7 12 12 C 1.53004 * 109.46548 * 274.99702 * 10 9 7 13 13 C 1.52998 * 109.46684 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47351 * 59.99682 * 13 12 10 15 15 C 1.53001 * 109.47136 * 299.99774 * 14 13 12 16 16 C 1.52992 * 109.47511 * 154.99366 * 10 9 7 17 17 H 1.09003 * 109.46943 * 59.99313 * 16 10 9 18 18 C 1.53001 * 109.47088 * 300.00101 * 16 10 9 19 19 C 1.50707 * 109.47032 * 174.99815 * 18 16 10 20 20 C 1.34516 * 125.78774 * 89.99807 * 19 18 16 21 21 C 1.41376 * 106.84089 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.84242 * 0.02562 * 21 20 19 23 23 O 1.34298 * 125.79155 * 269.97029 * 19 18 16 24 24 H 0.97001 * 120.00636 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00205 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.46791 * 299.99586 * 12 10 9 27 27 H 1.08993 * 109.47258 * 59.99611 * 12 10 9 28 28 H 1.09005 * 109.47018 * 179.97438 * 13 12 10 29 29 H 1.09007 * 109.47219 * 299.99764 * 13 12 10 30 30 H 1.09000 * 109.47105 * 60.00169 * 14 13 12 31 31 H 1.08998 * 109.47141 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47447 * 300.00186 * 15 14 13 33 33 H 1.09003 * 109.46904 * 180.02562 * 15 14 13 34 34 H 1.09003 * 109.47516 * 54.99843 * 18 16 10 35 35 H 1.09004 * 109.47245 * 294.99893 * 18 16 10 36 36 H 1.08003 * 126.58045 * 0.02562 * 20 19 18 37 37 H 1.08003 * 126.58479 * 179.97438 * 21 20 19 38 38 H 1.07996 * 125.79220 * 179.73892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9685 -3.5502 0.5916 12 6 2.4230 -4.0362 -1.4350 13 6 3.1885 -5.3609 -1.4338 14 6 2.3115 -6.4563 -0.8240 15 6 1.9467 -6.0768 0.6126 16 6 1.1806 -4.7519 0.6112 17 1 0.2703 -4.8583 0.0212 18 6 0.8158 -4.3724 2.0478 19 6 -0.1471 -5.3882 2.6066 20 6 0.1893 -6.5104 3.2677 21 6 -1.0180 -7.1624 3.6086 22 6 -2.0199 -6.3999 3.1350 23 8 -1.4864 -5.3264 2.5295 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 1.5127 -4.1427 -2.0249 27 1 3.0481 -3.2560 -1.8692 28 1 3.4481 -5.6314 -2.4573 29 1 4.0989 -5.2539 -0.8438 30 1 1.4012 -6.5633 -1.4139 31 1 2.8571 -7.3999 -0.8227 32 1 2.8570 -5.9698 1.2025 33 1 1.3222 -6.8575 1.0472 34 1 0.3497 -3.3870 2.0562 35 1 1.7183 -4.3526 2.6588 36 1 1.1896 -6.8481 3.4952 37 1 -1.1169 -8.0942 4.1455 38 1 -3.0742 -6.6164 3.2232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309630145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:32 Heat of formation + Delta-G solvation = -0.120642 kcal Electronic energy + Delta-G solvation = -18558.147386 eV Core-core repulsion = 15787.432145 eV Total energy + Delta-G solvation = -2770.715241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31788 -38.52631 -33.96124 -33.37392 -32.43721 -31.07460 -29.12064 -27.92825 -25.44606 -23.64790 -21.67224 -21.35921 -20.81472 -19.91269 -19.31696 -17.02414 -16.98108 -15.83982 -15.10183 -14.45909 -14.18397 -14.15781 -13.63570 -13.51905 -12.95470 -12.61906 -12.58942 -12.34617 -12.16851 -12.10891 -11.65549 -11.01882 -10.94418 -10.83953 -10.68106 -10.46696 -10.19578 -10.12296 -10.05551 -9.69487 -9.59016 -9.36536 -8.84138 -8.14488 -6.90720 -5.72752 -3.01253 2.00570 2.83263 3.30109 3.45906 3.50603 3.51381 4.61511 4.93038 5.07327 5.19145 5.21689 5.24665 5.29769 5.57008 5.62849 5.74274 5.76411 5.89650 5.94446 5.99545 6.04127 6.08226 6.10860 6.18285 6.26944 6.31034 6.47703 6.49295 6.54377 6.68183 6.69439 6.74602 6.86518 7.01171 7.18299 7.44530 7.73353 8.45756 9.56800 10.15114 10.49945 11.49690 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.006792 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.288361 B = 4121.513806 C = 5223.275467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.185 3.815 11 H 0.047 0.953 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.084 4.084 17 H 0.068 0.932 18 C -0.039 4.039 19 C 0.018 3.982 20 C -0.228 4.228 21 C -0.215 4.215 22 C -0.057 4.057 23 O -0.172 6.172 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -14.975 3.664 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.075 3.925 11 H 0.065 0.935 12 C -0.175 4.175 13 C -0.156 4.156 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.103 4.103 17 H 0.087 0.913 18 C -0.076 4.076 19 C -0.033 4.033 20 C -0.247 4.247 21 C -0.234 4.234 22 C -0.125 4.125 23 O -0.068 6.068 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.968 -14.569 3.539 15.024 hybrid contribution 0.113 0.662 0.090 0.678 sum 1.082 -13.907 3.628 14.413 Atomic orbital electron populations 1.69650 1.05055 1.25685 1.57729 1.24718 0.95454 0.97566 1.03164 0.86313 0.78533 0.83817 0.77788 1.21375 1.21783 1.21337 1.19181 0.90917 0.84132 1.42583 0.91301 1.42463 1.05760 0.99728 1.88525 1.20207 0.93908 0.85507 0.92908 0.93457 1.22231 0.99612 0.95240 1.00403 1.21553 0.98521 0.95896 0.99623 1.21505 0.99636 0.97749 0.96449 1.21640 0.99867 0.96994 0.96600 1.21388 0.99320 0.95241 0.94376 0.91316 1.20304 0.94806 0.96573 0.95914 1.22856 0.81019 0.98632 1.00782 1.21512 0.99369 0.97110 1.06690 1.21751 0.92595 1.02430 1.06670 1.23925 0.99293 0.87996 1.01241 1.84089 1.20706 1.40893 1.61081 0.93517 0.78257 0.92804 0.92098 0.93092 0.92516 0.92403 0.92863 0.92173 0.92072 0.88254 0.89350 0.83903 0.84053 0.78702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.66 4.35 -53.42 -0.23 -17.90 16 10 C 0.18 3.57 2.21 -67.93 -0.15 3.42 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.42 5.50 -26.73 -0.15 -2.56 16 13 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 14 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.11 -1.56 4.91 -26.71 -0.13 -1.69 16 16 C -0.08 -1.39 1.76 -90.60 -0.16 -1.55 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.04 -0.65 5.14 -27.88 -0.14 -0.80 16 19 C 0.02 0.28 6.05 -35.62 -0.22 0.07 16 20 C -0.23 -3.18 9.40 -39.70 -0.37 -3.55 16 21 C -0.22 -2.72 10.91 -39.71 -0.43 -3.16 16 22 C -0.06 -0.74 12.09 29.42 0.36 -0.39 16 23 O -0.17 -2.86 10.65 5.72 0.06 -2.80 16 24 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.38 10.09 7.59 -40.82 -0.31 9.78 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.82 6.41 -51.93 -0.33 0.49 16 34 H 0.10 1.98 7.30 -51.93 -0.38 1.60 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -29.87 307.16 -7.86 -37.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.06 Total: 9.15 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.96 Total: -20.80 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.49 Total: -45.24 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.06 Total: -2.80 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.87 -7.86 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.610 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds