Wall clock time and date at job start Mon Mar 30 2020 07:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48504 * 109.46928 * 239.99935 * 3 2 1 5 5 H 1.48507 * 109.46770 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47250 * 119.99768 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00072 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46687 * 34.98893 * 10 9 7 12 12 C 1.53004 * 109.46548 * 274.99702 * 10 9 7 13 13 C 1.52998 * 109.46684 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47351 * 59.99682 * 13 12 10 15 15 C 1.53001 * 109.47136 * 299.99774 * 14 13 12 16 16 C 1.52992 * 109.47511 * 154.99366 * 10 9 7 17 17 H 1.09003 * 109.46943 * 59.99313 * 16 10 9 18 18 C 1.53001 * 109.47088 * 300.00101 * 16 10 9 19 19 C 1.50707 * 109.47032 * 174.99815 * 18 16 10 20 20 C 1.34516 * 125.78774 * 89.99807 * 19 18 16 21 21 C 1.41376 * 106.84089 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.84242 * 0.02562 * 21 20 19 23 23 O 1.34298 * 125.79155 * 269.97029 * 19 18 16 24 24 H 0.97001 * 120.00636 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00205 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.46791 * 299.99586 * 12 10 9 27 27 H 1.08993 * 109.47258 * 59.99611 * 12 10 9 28 28 H 1.09005 * 109.47018 * 179.97438 * 13 12 10 29 29 H 1.09007 * 109.47219 * 299.99764 * 13 12 10 30 30 H 1.09000 * 109.47105 * 60.00169 * 14 13 12 31 31 H 1.08998 * 109.47141 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47447 * 300.00186 * 15 14 13 33 33 H 1.09003 * 109.46904 * 180.02562 * 15 14 13 34 34 H 1.09003 * 109.47516 * 54.99843 * 18 16 10 35 35 H 1.09004 * 109.47245 * 294.99893 * 18 16 10 36 36 H 1.08003 * 126.58045 * 0.02562 * 20 19 18 37 37 H 1.08003 * 126.58479 * 179.97438 * 21 20 19 38 38 H 1.07996 * 125.79220 * 179.73892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9685 -3.5502 0.5916 12 6 2.4230 -4.0362 -1.4350 13 6 3.1885 -5.3609 -1.4338 14 6 2.3115 -6.4563 -0.8240 15 6 1.9467 -6.0768 0.6126 16 6 1.1806 -4.7519 0.6112 17 1 0.2703 -4.8583 0.0212 18 6 0.8158 -4.3724 2.0478 19 6 -0.1471 -5.3882 2.6066 20 6 0.1893 -6.5104 3.2677 21 6 -1.0180 -7.1624 3.6086 22 6 -2.0199 -6.3999 3.1350 23 8 -1.4864 -5.3264 2.5295 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 1.5127 -4.1427 -2.0249 27 1 3.0481 -3.2560 -1.8692 28 1 3.4481 -5.6314 -2.4573 29 1 4.0989 -5.2539 -0.8438 30 1 1.4012 -6.5633 -1.4139 31 1 2.8571 -7.3999 -0.8227 32 1 2.8570 -5.9698 1.2025 33 1 1.3222 -6.8575 1.0472 34 1 0.3497 -3.3870 2.0562 35 1 1.7183 -4.3526 2.6588 36 1 1.1896 -6.8481 3.4952 37 1 -1.1169 -8.0942 4.1455 38 1 -3.0742 -6.6164 3.2232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309630145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:32 Heat of formation + Delta-G solvation = -16.798531 kcal Electronic energy + Delta-G solvation = -18558.870593 eV Core-core repulsion = 15787.432145 eV Total energy + Delta-G solvation = -2771.438448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43007 -39.92035 -35.80318 -34.61697 -33.58827 -32.92256 -30.33249 -29.53655 -26.74848 -25.55591 -22.94323 -22.51740 -22.16991 -21.07311 -20.72459 -19.02714 -18.06909 -17.14738 -16.71029 -15.89360 -15.69259 -15.50419 -15.19048 -14.85698 -14.55208 -13.89808 -13.75041 -13.60561 -13.55625 -13.32273 -12.90854 -12.87551 -12.78017 -12.29759 -12.22916 -12.01569 -11.87722 -11.74779 -11.43441 -11.19854 -10.88464 -10.77075 -10.69036 -9.26257 -8.93708 -7.90508 -5.18184 0.90508 1.47163 1.49937 1.55830 1.80231 2.24760 2.58178 3.42280 3.72353 3.80538 3.94550 4.06944 4.19317 4.24499 4.34134 4.41798 4.47174 4.60172 4.62831 4.67513 4.75338 4.82193 4.97620 5.02332 5.06366 5.16023 5.20177 5.30273 5.33549 5.36669 5.41206 5.44582 5.55055 5.58808 5.71611 5.75357 6.31290 6.35248 7.36907 8.14501 8.37455 9.32948 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.006792 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.288361 B = 4121.513806 C = 5223.275467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.735 5.735 10 C 0.180 3.820 11 H 0.047 0.953 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.072 4.072 17 H 0.047 0.953 18 C -0.030 4.030 19 C -0.018 4.018 20 C -0.214 4.214 21 C -0.218 4.218 22 C -0.060 4.060 23 O -0.206 6.206 24 H 0.249 0.751 25 H 0.369 0.631 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -17.431 4.333 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.072 3.928 11 H 0.065 0.935 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.092 4.092 17 H 0.065 0.935 18 C -0.068 4.068 19 C -0.068 4.068 20 C -0.233 4.233 21 C -0.237 4.237 22 C -0.127 4.127 23 O -0.103 6.103 24 H 0.057 0.943 25 H 0.201 0.799 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.365 -17.070 4.205 17.738 hybrid contribution -0.334 1.333 -0.087 1.377 sum 2.031 -15.736 4.118 16.392 Atomic orbital electron populations 1.69824 1.06622 1.25847 1.60009 1.25505 0.96252 1.00917 1.04267 0.85276 0.77185 0.79577 0.78137 1.20569 1.22501 1.20377 1.19572 0.91338 0.85239 1.40316 0.90681 1.42656 1.05251 1.00997 1.88509 1.20448 0.93844 0.84439 0.94078 0.93541 1.22095 0.99131 0.97151 0.98557 1.21500 0.98429 0.93726 1.01144 1.21508 0.99534 0.98507 0.95480 1.21588 1.00028 0.94961 0.97621 1.21242 0.98221 0.96005 0.93711 0.93475 1.20088 0.95375 0.94910 0.96405 1.22706 0.80964 0.99724 1.03375 1.21818 1.00878 0.95900 1.04700 1.22152 0.91643 1.03375 1.06491 1.24769 1.01186 0.86773 0.99933 1.84061 1.21229 1.42730 1.62252 0.94266 0.79910 0.94293 0.94221 0.91442 0.91416 0.92979 0.89805 0.90754 0.91056 0.92625 0.88278 0.81897 0.80904 0.75328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.23 -12.98 9.93 84.03 0.83 -12.15 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.37 4.35 -322.93 -1.40 -38.77 16 10 C 0.18 7.08 2.21 44.99 0.10 7.18 16 11 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 12 C -0.13 -4.65 5.50 30.59 0.17 -4.48 16 13 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 14 C -0.11 -2.64 5.92 30.60 0.18 -2.45 16 15 C -0.10 -2.63 4.91 30.61 0.15 -2.48 16 16 C -0.07 -2.43 1.76 -10.78 -0.02 -2.45 16 17 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 18 C -0.03 -1.05 5.14 29.85 0.15 -0.90 16 19 C -0.02 -0.57 6.05 24.84 0.15 -0.42 16 20 C -0.21 -5.48 9.40 22.19 0.21 -5.27 16 21 C -0.22 -4.86 10.91 22.19 0.24 -4.62 16 22 C -0.06 -1.46 12.09 66.97 0.81 -0.65 16 23 O -0.21 -6.88 10.65 -2.45 -0.03 -6.91 16 24 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.37 20.64 7.59 -92.71 -0.70 19.94 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.70 6.41 -2.39 -0.02 1.68 16 34 H 0.06 2.38 7.30 -2.39 -0.02 2.36 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -66.77 307.16 4.83 -61.94 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.33 Total: 30.80 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.63 Total: -35.43 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -1.12 Total: -99.29 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.03 Total: -6.91 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -66.77 4.83 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.141 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds