Wall clock time and date at job start Mon Mar 30 2020 07:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48504 * 109.46740 * 269.99873 * 3 2 1 5 5 H 1.48490 * 109.47387 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47160 * 150.00244 * 3 2 1 7 7 C 1.38815 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47073 * 324.99506 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99749 * 10 9 7 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46969 * 299.99938 * 13 12 10 15 15 C 1.52997 * 109.47143 * 60.00070 * 14 13 12 16 16 C 1.52996 * 109.47131 * 299.99831 * 15 14 13 17 17 H 1.09004 * 109.47298 * 300.00283 * 16 15 14 18 18 C 1.53001 * 109.47486 * 179.97438 * 16 15 14 19 19 C 1.50708 * 109.46840 * 65.00179 * 18 16 15 20 20 C 1.34509 * 125.78790 * 89.71819 * 19 18 16 21 21 C 1.41383 * 106.83907 * 179.89117 * 20 19 18 22 22 C 1.34509 * 106.83891 * 0.37099 * 21 20 19 23 23 O 1.34297 * 108.42529 * 359.77363 * 22 21 20 24 24 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00175 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 27 27 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 28 28 H 1.09004 * 109.47552 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.47298 * 59.99717 * 13 12 10 30 30 H 1.09004 * 109.46930 * 300.00004 * 14 13 12 31 31 H 1.09002 * 109.47067 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 33 33 H 1.08992 * 109.47303 * 60.00452 * 15 14 13 34 34 H 1.09000 * 109.47229 * 185.00004 * 18 16 15 35 35 H 1.08998 * 109.46991 * 305.00500 * 18 16 15 36 36 H 1.07995 * 126.58435 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.58141 * 180.12381 * 21 20 19 38 38 H 1.08006 * 125.78858 * 179.75657 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9685 -3.5507 -0.5890 12 6 2.4218 -4.0357 1.4375 13 6 3.1873 -5.3604 1.4374 14 6 2.3105 -6.4560 0.8276 15 6 1.9465 -6.0772 -0.6094 16 6 1.1811 -4.7525 -0.6093 17 1 0.2703 -4.8591 -0.0198 18 6 0.8176 -4.3732 -2.0463 19 6 -0.1443 -5.3895 -2.6060 20 6 -1.4857 -5.3309 -2.5250 21 6 -1.9861 -6.4791 -3.1808 22 6 -0.9203 -7.1748 -3.6161 23 8 0.1926 -6.5101 -3.2651 24 1 -0.4849 0.8401 0.0004 25 1 0.3554 -2.3880 0.0005 26 1 3.0468 -3.2554 1.8717 27 1 1.5111 -4.1419 2.0270 28 1 3.4470 -5.6302 2.4611 29 1 4.0980 -5.2538 0.8480 30 1 1.3997 -6.5626 1.4170 31 1 2.8556 -7.3999 0.8279 32 1 1.3215 -6.8575 -1.0436 33 1 2.8571 -5.9706 -1.1987 34 1 0.3513 -3.3881 -2.0552 35 1 1.7207 -4.3534 -2.6562 36 1 -2.0686 -4.5546 -2.0520 37 1 -3.0247 -6.7482 -3.3047 38 1 -0.9539 -8.1096 -4.1561 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309630148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:36 Heat of formation + Delta-G solvation = -1.127030 kcal Electronic energy + Delta-G solvation = -18561.363789 eV Core-core repulsion = 15790.604908 eV Total energy + Delta-G solvation = -2770.758881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30953 -38.51182 -33.97106 -33.29298 -32.48121 -31.08246 -29.19605 -27.90597 -25.36590 -23.65507 -21.70873 -21.35140 -20.81986 -19.86874 -19.31769 -17.04573 -16.99515 -15.89441 -15.07564 -14.57151 -14.18265 -13.98592 -13.56745 -13.36978 -13.13164 -12.74036 -12.57364 -12.43461 -12.20841 -11.82029 -11.48349 -11.19888 -10.95972 -10.86845 -10.67448 -10.43534 -10.17954 -10.14800 -10.05549 -9.71392 -9.56777 -9.40060 -8.85931 -8.13196 -6.92160 -5.74937 -3.02990 2.00052 2.88325 3.27531 3.44568 3.50230 3.51460 4.60382 4.93493 5.08002 5.19523 5.22879 5.27356 5.35243 5.56239 5.59988 5.75227 5.79401 5.91587 5.94407 6.00956 6.05737 6.11713 6.12279 6.23614 6.27281 6.30798 6.48468 6.52525 6.55013 6.69122 6.71786 6.76102 6.82718 7.00767 7.17884 7.43839 7.72933 8.43936 9.55216 10.13008 10.48060 11.47692 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.006738 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.765573 B = 4154.699054 C = 5237.311743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.048 0.952 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.084 4.084 17 H 0.070 0.930 18 C -0.036 4.036 19 C 0.013 3.987 20 C -0.222 4.222 21 C -0.210 4.210 22 C -0.063 4.063 23 O -0.178 6.178 24 H 0.254 0.746 25 H 0.383 0.617 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -14.635 -3.381 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.074 3.926 11 H 0.066 0.934 12 C -0.175 4.175 13 C -0.156 4.156 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.104 4.104 17 H 0.088 0.912 18 C -0.073 4.073 19 C -0.038 4.038 20 C -0.241 4.241 21 C -0.230 4.230 22 C -0.130 4.130 23 O -0.075 6.075 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.001 -14.556 -3.446 14.992 hybrid contribution -0.256 0.908 0.046 0.944 sum 0.745 -13.649 -3.400 14.085 Atomic orbital electron populations 1.69656 1.05048 1.25562 1.57911 1.24711 0.95471 0.97564 1.03189 0.86233 0.78675 0.84087 0.77471 1.21805 1.21884 1.20839 1.19231 0.90976 0.84109 1.42357 0.91242 1.42459 1.05726 0.99744 1.88539 1.20218 0.93952 0.85467 0.92917 0.93443 1.22227 0.99620 0.95244 1.00370 1.21552 0.98536 0.95885 0.99626 1.21507 0.99644 0.97772 0.96399 1.21564 0.99924 0.96780 0.96486 1.21420 0.99361 0.95221 0.94373 0.91188 1.20352 0.96817 0.94855 0.95293 1.22854 0.95333 0.87970 0.97601 1.21645 0.94004 1.01331 1.07080 1.21791 0.99724 0.97087 1.04362 1.23864 0.83596 0.99761 1.05803 1.84031 1.34786 1.30629 1.58012 0.93585 0.78303 0.92086 0.92778 0.93066 0.92517 0.92388 0.92873 0.92501 0.92151 0.87087 0.90659 0.83468 0.84002 0.78774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.38 4.35 -53.42 -0.23 -17.61 16 10 C 0.18 3.55 2.21 -67.93 -0.15 3.40 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 14 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.11 -1.58 5.02 -26.73 -0.13 -1.71 16 16 C -0.08 -1.40 1.76 -90.62 -0.16 -1.56 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.04 -0.61 5.14 -27.88 -0.14 -0.75 16 19 C 0.01 0.20 5.73 -35.62 -0.20 0.00 16 20 C -0.22 -3.44 10.81 -39.70 -0.43 -3.87 16 21 C -0.21 -2.79 10.91 -39.70 -0.43 -3.22 16 22 C -0.06 -0.78 12.09 29.41 0.36 -0.43 16 23 O -0.18 -2.68 10.07 5.72 0.06 -2.62 16 24 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.38 9.81 7.59 -40.82 -0.31 9.50 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 2.13 7.30 -51.93 -0.38 1.75 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.20 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -29.30 308.26 -7.92 -37.22 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.09 Total: 9.36 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.01 Total: -21.23 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.49 Total: -44.57 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.06 Total: -2.62 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.30 -7.92 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.095 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds