Wall clock time and date at job start Mon Mar 30 2020 07:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48504 * 109.46740 * 269.99873 * 3 2 1 5 5 H 1.48490 * 109.47387 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47160 * 150.00244 * 3 2 1 7 7 C 1.38815 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47073 * 324.99506 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99749 * 10 9 7 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46969 * 299.99938 * 13 12 10 15 15 C 1.52997 * 109.47143 * 60.00070 * 14 13 12 16 16 C 1.52996 * 109.47131 * 299.99831 * 15 14 13 17 17 H 1.09004 * 109.47298 * 300.00283 * 16 15 14 18 18 C 1.53001 * 109.47486 * 179.97438 * 16 15 14 19 19 C 1.50708 * 109.46840 * 65.00179 * 18 16 15 20 20 C 1.34509 * 125.78790 * 89.71819 * 19 18 16 21 21 C 1.41383 * 106.83907 * 179.89117 * 20 19 18 22 22 C 1.34509 * 106.83891 * 0.37099 * 21 20 19 23 23 O 1.34297 * 108.42529 * 359.77363 * 22 21 20 24 24 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00175 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 27 27 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 28 28 H 1.09004 * 109.47552 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.47298 * 59.99717 * 13 12 10 30 30 H 1.09004 * 109.46930 * 300.00004 * 14 13 12 31 31 H 1.09002 * 109.47067 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 33 33 H 1.08992 * 109.47303 * 60.00452 * 15 14 13 34 34 H 1.09000 * 109.47229 * 185.00004 * 18 16 15 35 35 H 1.08998 * 109.46991 * 305.00500 * 18 16 15 36 36 H 1.07995 * 126.58435 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.58141 * 180.12381 * 21 20 19 38 38 H 1.08006 * 125.78858 * 179.75657 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9685 -3.5507 -0.5890 12 6 2.4218 -4.0357 1.4375 13 6 3.1873 -5.3604 1.4374 14 6 2.3105 -6.4560 0.8276 15 6 1.9465 -6.0772 -0.6094 16 6 1.1811 -4.7525 -0.6093 17 1 0.2703 -4.8591 -0.0198 18 6 0.8176 -4.3732 -2.0463 19 6 -0.1443 -5.3895 -2.6060 20 6 -1.4857 -5.3309 -2.5250 21 6 -1.9861 -6.4791 -3.1808 22 6 -0.9203 -7.1748 -3.6161 23 8 0.1926 -6.5101 -3.2651 24 1 -0.4849 0.8401 0.0004 25 1 0.3554 -2.3880 0.0005 26 1 3.0468 -3.2554 1.8717 27 1 1.5111 -4.1419 2.0270 28 1 3.4470 -5.6302 2.4611 29 1 4.0980 -5.2538 0.8480 30 1 1.3997 -6.5626 1.4170 31 1 2.8556 -7.3999 0.8279 32 1 1.3215 -6.8575 -1.0436 33 1 2.8571 -5.9706 -1.1987 34 1 0.3513 -3.3881 -2.0552 35 1 1.7207 -4.3534 -2.6562 36 1 -2.0686 -4.5546 -2.0520 37 1 -3.0247 -6.7482 -3.3047 38 1 -0.9539 -8.1096 -4.1561 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309630148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:36 Heat of formation + Delta-G solvation = -16.911409 kcal Electronic energy + Delta-G solvation = -18562.048251 eV Core-core repulsion = 15790.604908 eV Total energy + Delta-G solvation = -2771.443343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.43049 -39.91797 -35.79478 -34.57529 -33.62210 -32.94709 -30.42487 -29.51644 -26.69671 -25.54218 -23.03907 -22.48481 -22.19805 -21.05663 -20.73931 -19.02646 -18.09857 -17.18727 -16.68521 -15.87338 -15.75409 -15.52378 -15.06464 -14.63441 -14.51891 -14.40393 -13.78544 -13.68554 -13.48755 -13.11100 -12.96343 -12.85091 -12.68219 -12.52578 -12.17748 -12.01138 -11.88999 -11.71699 -11.45614 -11.21840 -10.89195 -10.85224 -10.70629 -9.28471 -8.92715 -7.90514 -5.17481 0.89089 1.48200 1.48975 1.57197 1.76797 2.17520 2.58416 3.42794 3.75136 3.76052 3.92329 4.05020 4.17902 4.21025 4.34386 4.37386 4.49100 4.59248 4.62901 4.67313 4.71706 4.79705 4.97302 5.01496 5.07283 5.12841 5.17931 5.28487 5.32930 5.35814 5.40093 5.43604 5.55726 5.57674 5.66784 5.72037 6.30505 6.31964 7.38091 8.14824 8.38474 9.32942 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.006738 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.765573 B = 4154.699054 C = 5237.311743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.231 4.231 8 H 0.073 0.927 9 N -0.733 5.733 10 C 0.181 3.819 11 H 0.043 0.957 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.102 4.102 16 C -0.073 4.073 17 H 0.057 0.943 18 C -0.028 4.028 19 C -0.007 4.007 20 C -0.236 4.236 21 C -0.224 4.224 22 C -0.046 4.046 23 O -0.186 6.186 24 H 0.249 0.751 25 H 0.372 0.628 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.167 0.833 38 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -16.992 -3.846 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.091 0.909 9 N -0.373 5.373 10 C 0.073 3.927 11 H 0.061 0.939 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.139 4.139 16 C -0.092 4.092 17 H 0.075 0.925 18 C -0.065 4.065 19 C -0.057 4.057 20 C -0.256 4.256 21 C -0.243 4.243 22 C -0.113 4.113 23 O -0.082 6.082 24 H 0.057 0.943 25 H 0.203 0.797 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.184 0.816 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.055 -16.950 -3.907 17.515 hybrid contribution -0.594 1.548 0.150 1.665 sum 1.461 -15.402 -3.757 15.920 Atomic orbital electron populations 1.69813 1.06477 1.25744 1.60029 1.25457 0.96264 1.00731 1.04287 0.85235 0.77749 0.80096 0.77294 1.21625 1.22526 1.19592 1.19580 0.91301 0.85245 1.40208 0.90862 1.42622 1.05319 1.00826 1.88499 1.20424 0.93758 0.84484 0.94071 0.93926 1.22089 0.99279 0.96994 0.98521 1.21498 0.98355 0.93838 1.01148 1.21500 0.99718 0.98481 0.95217 1.21502 0.99789 0.95043 0.97611 1.21273 0.98553 0.95663 0.93723 0.92498 1.20082 0.96839 0.93902 0.95694 1.22519 0.95072 0.88822 0.99307 1.21825 0.94194 1.02192 1.07366 1.22094 1.01435 0.96292 1.04449 1.24784 0.82332 1.00215 1.03936 1.84019 1.35964 1.30295 1.57967 0.94255 0.79652 0.94152 0.93886 0.91255 0.91711 0.92560 0.90040 0.91900 0.91476 0.90407 0.90486 0.84498 0.81580 0.74208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.23 -12.74 9.93 84.03 0.83 -11.90 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.73 -36.45 4.35 -322.92 -1.40 -37.86 16 10 C 0.18 7.07 2.21 44.99 0.10 7.17 16 11 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 12 C -0.13 -4.58 5.50 30.59 0.17 -4.42 16 13 C -0.11 -2.93 5.92 30.59 0.18 -2.74 16 14 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 15 C -0.10 -2.72 5.02 30.59 0.15 -2.57 16 16 C -0.07 -2.43 1.76 -10.79 -0.02 -2.45 16 17 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 18 C -0.03 -0.96 5.14 29.85 0.15 -0.81 16 19 C -0.01 -0.23 5.73 24.83 0.14 -0.09 16 20 C -0.24 -7.37 10.81 22.19 0.24 -7.13 16 21 C -0.22 -5.47 10.91 22.19 0.24 -5.23 16 22 C -0.05 -1.00 12.09 66.97 0.81 -0.19 16 23 O -0.19 -5.22 10.07 -2.45 -0.02 -5.25 16 24 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.37 20.01 7.59 -92.71 -0.70 19.31 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.65 6.91 -2.39 -0.02 1.63 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 3.19 7.30 -2.39 -0.02 3.17 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -64.25 308.26 4.86 -59.39 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.33 Total: 31.09 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 3.65 Total: -36.71 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -1.12 Total: -97.00 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.02 Total: -5.25 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -64.25 4.86 -59.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309630148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.475 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds