Wall clock time and date at job start Mon Mar 30 2020 07:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.46900 * 111.00108 * 205.00462 * 13 11 10 15 15 C 1.53000 * 109.47136 * 180.02562 * 14 13 11 16 16 O 1.42901 * 109.47245 * 64.99648 * 15 14 13 17 17 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 18 18 C 1.38243 * 119.99881 * 279.73067 * 17 11 10 19 19 C 1.38236 * 119.99546 * 179.78181 * 18 17 11 20 20 C 1.38230 * 120.00068 * 0.44148 * 19 18 17 21 21 C 1.38228 * 120.00363 * 359.81337 * 20 19 18 22 22 C 1.38231 * 119.99932 * 359.97297 * 21 20 19 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.00891 * 110.99568 * 81.04576 * 13 11 10 29 29 H 1.09001 * 109.46729 * 299.99669 * 14 13 11 30 30 H 1.08996 * 109.47288 * 59.99365 * 14 13 11 31 31 H 1.08998 * 109.46910 * 184.99802 * 15 14 13 32 32 H 1.09000 * 109.46884 * 304.99582 * 15 14 13 33 33 H 0.96698 * 113.99726 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.99681 * 359.97438 * 18 17 11 35 35 H 1.08001 * 119.99400 * 180.27071 * 19 18 17 36 36 H 1.08007 * 119.99792 * 179.83387 * 20 19 18 37 37 H 1.07998 * 120.00222 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.00023 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9148 -2.0473 -0.8419 13 7 6.0411 -2.0516 1.2552 14 6 7.3884 -1.4917 1.0846 15 6 7.8637 -0.8934 2.4102 16 8 8.0068 -1.9345 3.3786 17 6 6.0537 -4.0522 -0.1241 18 6 6.0933 -4.8715 0.9887 19 6 6.5499 -6.1713 0.8740 20 6 6.9754 -6.6488 -0.3514 21 6 6.9407 -5.8279 -1.4630 22 6 6.4800 -4.5296 -1.3494 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.6577 -3.1507 0.8897 27 1 3.6584 -3.1504 -0.8902 28 1 6.0233 -2.7303 2.0016 29 1 8.0737 -2.2814 0.7764 30 1 7.3646 -0.7133 0.3220 31 1 8.8244 -0.4001 2.2624 32 1 7.1325 -0.1664 2.7636 33 1 8.3056 -1.6270 4.2453 34 1 5.7647 -4.4971 1.9469 35 1 6.5768 -6.8127 1.7425 36 1 7.3346 -7.6634 -0.4404 37 1 7.2727 -6.2012 -2.4205 38 1 6.4525 -3.8884 -2.2179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309845099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:30 Heat of formation + Delta-G solvation = -35.983032 kcal Electronic energy + Delta-G solvation = -18046.109748 eV Core-core repulsion = 15273.839398 eV Total energy + Delta-G solvation = -2772.270350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54139 -37.38477 -35.95658 -33.24116 -31.84695 -30.80417 -30.49920 -28.19158 -25.99317 -23.27718 -22.61820 -21.63045 -20.67624 -19.71510 -17.60697 -17.01102 -16.53072 -15.77941 -15.23534 -14.75567 -14.51880 -14.12279 -14.00853 -13.57775 -13.24165 -13.02197 -12.74353 -12.48084 -12.35331 -12.08487 -11.61917 -11.35857 -11.14305 -10.94521 -10.73102 -10.61733 -10.06612 -9.81870 -9.69704 -9.57324 -9.02575 -8.82185 -8.47960 -8.42034 -8.07524 -5.92857 -3.88843 1.47108 1.50181 3.38881 3.45792 3.53472 3.89553 4.26640 4.42317 4.56668 4.90779 4.98099 5.07028 5.18301 5.21576 5.34481 5.40756 5.42751 5.57538 5.60512 5.71744 5.89193 5.89903 6.07086 6.10949 6.16207 6.51394 6.53734 6.58766 6.66986 6.75394 7.06780 7.13029 7.33211 7.52006 7.55999 7.72135 7.76598 7.95255 8.67622 9.13575 9.71046 11.21087 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.006426 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.624868 B = 4356.342260 C = 5403.156001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.083 4.083 11 C 0.121 3.879 12 H 0.080 0.920 13 N -0.668 5.668 14 C 0.059 3.941 15 C 0.076 3.924 16 O -0.575 6.575 17 C -0.099 4.099 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.116 4.116 23 H 0.261 0.739 24 H 0.003 0.997 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.346 0.654 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.377 0.623 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.809 -7.424 2.313 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.043 4.043 10 C -0.121 4.121 11 C 0.011 3.989 12 H 0.098 0.902 13 N -0.300 5.300 14 C -0.071 4.071 15 C -0.002 4.002 16 O -0.380 6.380 17 C -0.101 4.101 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.167 0.833 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.140 -7.043 1.727 19.536 hybrid contribution 1.036 0.416 0.313 1.159 sum 19.176 -6.627 2.040 20.391 Atomic orbital electron populations 1.69932 1.06339 1.26638 1.52006 1.25020 0.94667 0.99127 0.94813 0.86770 0.80640 0.83600 0.78277 1.20631 1.21716 1.18578 1.21245 0.90005 0.94230 1.49901 0.91364 1.19483 0.96125 0.92005 0.96662 1.21442 0.89274 1.00431 1.00917 1.20897 0.97795 0.87827 0.92353 0.90182 1.60700 1.22350 1.40133 1.06865 1.21998 0.90236 0.99106 0.95726 1.22279 0.98795 0.89891 0.89277 1.86456 1.90963 1.36292 1.24303 1.20941 0.97327 0.98253 0.93569 1.20976 0.99715 0.93895 0.98583 1.21085 0.99236 0.95717 0.97515 1.21072 1.01216 0.99533 0.93150 1.21100 1.00225 0.94186 0.98400 1.21077 0.99221 0.95945 0.97196 0.92980 0.97867 0.94965 0.92632 0.92713 0.83256 0.95002 0.89911 0.93699 0.92382 0.77673 0.86009 0.86356 0.86550 0.86431 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.87 13.96 55.43 0.77 -28.10 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.13 3.93 -27.88 -0.11 -0.24 16 10 C -0.08 -1.70 4.81 -26.74 -0.13 -1.82 16 11 C 0.12 2.02 2.22 -68.86 -0.15 1.87 16 12 H 0.08 1.32 7.66 -51.93 -0.40 0.92 16 13 N -0.67 -10.74 5.69 -107.95 -0.61 -11.35 16 14 C 0.06 0.80 5.90 -3.82 -0.02 0.78 16 15 C 0.08 0.88 7.39 37.16 0.27 1.15 16 16 O -0.57 -6.65 13.18 -35.23 -0.46 -7.11 16 17 C -0.10 -1.50 4.71 -104.62 -0.49 -1.99 16 18 C -0.11 -1.62 9.12 -39.58 -0.36 -1.98 16 19 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 20 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 21 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 22 C -0.12 -1.60 9.67 -39.58 -0.38 -1.98 16 23 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 24 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 25 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.35 5.46 5.90 -39.30 -0.23 5.23 16 29 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 30 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.38 2.62 9.12 45.56 0.42 3.03 16 34 H 0.12 1.71 6.50 -52.49 -0.34 1.36 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -33.41 314.75 -8.33 -41.75 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.10 Total: 5.98 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.00 Total: -23.64 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.16 Total: -39.45 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.46 Total: -7.11 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.41 -8.33 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.764 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds