Wall clock time and date at job start Mon Mar 30 2020 07:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.46900 * 111.00108 * 205.00462 * 13 11 10 15 15 C 1.53000 * 109.47136 * 180.02562 * 14 13 11 16 16 O 1.42901 * 109.47245 * 64.99648 * 15 14 13 17 17 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 18 18 C 1.38243 * 119.99881 * 279.73067 * 17 11 10 19 19 C 1.38236 * 119.99546 * 179.78181 * 18 17 11 20 20 C 1.38230 * 120.00068 * 0.44148 * 19 18 17 21 21 C 1.38228 * 120.00363 * 359.81337 * 20 19 18 22 22 C 1.38231 * 119.99932 * 359.97297 * 21 20 19 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.00891 * 110.99568 * 81.04576 * 13 11 10 29 29 H 1.09001 * 109.46729 * 299.99669 * 14 13 11 30 30 H 1.08996 * 109.47288 * 59.99365 * 14 13 11 31 31 H 1.08998 * 109.46910 * 184.99802 * 15 14 13 32 32 H 1.09000 * 109.46884 * 304.99582 * 15 14 13 33 33 H 0.96698 * 113.99726 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.99681 * 359.97438 * 18 17 11 35 35 H 1.08001 * 119.99400 * 180.27071 * 19 18 17 36 36 H 1.08007 * 119.99792 * 179.83387 * 20 19 18 37 37 H 1.07998 * 120.00222 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.00023 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9148 -2.0473 -0.8419 13 7 6.0411 -2.0516 1.2552 14 6 7.3884 -1.4917 1.0846 15 6 7.8637 -0.8934 2.4102 16 8 8.0068 -1.9345 3.3786 17 6 6.0537 -4.0522 -0.1241 18 6 6.0933 -4.8715 0.9887 19 6 6.5499 -6.1713 0.8740 20 6 6.9754 -6.6488 -0.3514 21 6 6.9407 -5.8279 -1.4630 22 6 6.4800 -4.5296 -1.3494 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 3.6577 -3.1507 0.8897 27 1 3.6584 -3.1504 -0.8902 28 1 6.0233 -2.7303 2.0016 29 1 8.0737 -2.2814 0.7764 30 1 7.3646 -0.7133 0.3220 31 1 8.8244 -0.4001 2.2624 32 1 7.1325 -0.1664 2.7636 33 1 8.3056 -1.6270 4.2453 34 1 5.7647 -4.4971 1.9469 35 1 6.5768 -6.8127 1.7425 36 1 7.3346 -7.6634 -0.4404 37 1 7.2727 -6.2012 -2.4205 38 1 6.4525 -3.8884 -2.2179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309845099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:29 Heat of formation + Delta-G solvation = -59.935711 kcal Electronic energy + Delta-G solvation = -18047.148415 eV Core-core repulsion = 15273.839398 eV Total energy + Delta-G solvation = -2773.309017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62656 -38.35991 -37.12258 -35.21139 -33.41535 -32.00136 -31.77801 -29.40796 -27.62348 -24.77346 -23.66080 -22.65449 -22.23066 -21.19800 -18.87109 -18.50427 -17.92920 -16.89112 -16.42232 -16.09190 -15.79511 -15.60598 -15.27029 -14.75468 -14.72289 -14.24889 -14.15170 -13.92220 -13.68824 -13.39171 -13.06754 -12.86214 -12.54810 -12.31280 -11.96950 -11.89352 -11.69669 -11.51796 -11.44516 -11.20134 -10.89135 -10.71454 -9.81929 -9.59421 -9.29198 -8.25362 -6.28018 0.45039 0.50522 1.37227 1.40269 1.54762 2.40860 2.88181 3.10807 3.25832 3.47914 3.78641 3.95703 4.14889 4.23027 4.27784 4.30829 4.39818 4.52156 4.54467 4.64603 4.67690 4.80146 4.93524 4.93650 5.00341 5.10436 5.15933 5.25236 5.54849 5.57978 5.61257 5.64192 5.68931 5.76728 6.12804 6.19014 6.34669 6.51468 6.80079 6.93460 7.36146 8.91982 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.006426 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.624868 B = 4356.342260 C = 5403.156001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.531 4.531 8 H 0.025 0.975 9 C 0.004 3.996 10 C -0.074 4.074 11 C 0.134 3.866 12 H 0.083 0.917 13 N -0.682 5.682 14 C 0.057 3.943 15 C 0.080 3.920 16 O -0.592 6.592 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.129 4.129 23 H 0.265 0.735 24 H 0.010 0.990 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.345 0.655 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.396 0.604 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.571 -7.327 2.143 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.043 0.957 9 C -0.033 4.033 10 C -0.112 4.112 11 C 0.024 3.976 12 H 0.101 0.899 13 N -0.315 5.315 14 C -0.072 4.072 15 C 0.002 3.998 16 O -0.401 6.401 17 C -0.119 4.119 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.147 4.147 23 H 0.073 0.927 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.166 0.834 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.246 0.754 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.925 -6.958 1.570 22.107 hybrid contribution 0.126 0.253 0.384 0.477 sum 21.051 -6.705 1.954 22.179 Atomic orbital electron populations 1.70091 1.08388 1.28013 1.53292 1.26036 0.95592 1.03612 0.94205 0.85598 0.79631 0.77949 0.79109 1.19226 1.21147 1.16747 1.21611 0.92677 0.92798 1.49795 0.95679 1.19350 0.92730 0.94633 0.96582 1.21255 0.92658 0.97537 0.99742 1.20554 0.94623 0.89520 0.92930 0.89894 1.60665 1.24151 1.40166 1.06482 1.22079 0.88790 0.99036 0.97266 1.22222 0.99823 0.89470 0.88296 1.86408 1.91211 1.36821 1.25620 1.20786 0.99064 0.97408 0.94618 1.21067 1.00528 0.94874 0.98243 1.21392 0.98631 0.95216 0.98901 1.21479 0.99918 1.00817 0.92513 1.21450 0.99293 0.93470 0.99841 1.21285 0.99482 0.97053 0.96901 0.92660 0.97157 0.95126 0.94105 0.93697 0.83369 0.95195 0.89464 0.91020 0.93189 0.75435 0.86592 0.84285 0.83566 0.83779 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 46.09 27.47 68.60 1.88 47.98 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.24 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -32.24 9.66 25.60 0.25 -32.00 16 8 H 0.02 1.68 7.99 -2.91 -0.02 1.65 16 9 C 0.00 0.22 3.93 29.85 0.12 0.34 16 10 C -0.07 -3.10 4.81 30.59 0.15 -2.95 16 11 C 0.13 4.43 2.22 44.16 0.10 4.53 16 12 H 0.08 2.66 7.66 -2.39 -0.02 2.64 16 13 N -0.68 -21.53 5.69 -495.44 -2.82 -24.35 16 14 C 0.06 1.48 5.90 86.30 0.51 1.98 16 15 C 0.08 1.69 7.39 71.98 0.53 2.22 16 16 O -0.59 -12.67 13.18 -148.98 -1.96 -14.63 16 17 C -0.12 -3.47 4.71 -19.86 -0.09 -3.56 16 18 C -0.13 -3.61 9.12 22.27 0.20 -3.41 16 19 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 20 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 21 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 22 C -0.13 -3.38 9.67 22.27 0.22 -3.16 16 23 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 25 H 0.03 1.52 6.81 -2.39 -0.02 1.50 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.35 10.87 5.90 -89.70 -0.53 10.34 16 29 H 0.03 0.78 8.00 -2.39 -0.02 0.76 16 30 H 0.09 2.13 8.05 -2.39 -0.02 2.11 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16 34 H 0.12 3.29 6.50 -2.91 -0.02 3.27 16 35 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.13 3.04 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -73.16 314.75 0.30 -72.86 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.21 Total: 23.19 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 3.11 Total: -43.07 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.52 Total: -86.33 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.96 Total: -14.63 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -73.16 0.30 -72.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.924 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds