Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48494 * 109.47077 * 270.00001 * 3 2 1 5 5 H 1.48498 * 109.47387 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.46752 * 150.00696 * 3 2 1 7 7 C 1.37870 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 359.71825 * 7 2 1 9 9 C 1.50707 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46877 * 55.00315 * 11 10 9 13 13 N 1.46895 * 109.47066 * 295.00139 * 11 10 9 14 14 C 1.46907 * 111.00042 * 155.48653 * 13 11 10 15 15 C 1.52993 * 109.47242 * 185.18765 * 14 13 11 16 16 O 1.42893 * 109.47500 * 65.00189 * 15 14 13 17 17 C 1.50699 * 109.47254 * 175.00113 * 11 10 9 18 18 C 1.38233 * 119.99996 * 73.08117 * 17 11 10 19 19 C 1.38237 * 120.00087 * 179.79145 * 18 17 11 20 20 C 1.38237 * 119.99719 * 0.43500 * 19 18 17 21 21 C 1.38235 * 120.00141 * 359.81616 * 20 19 18 22 22 C 1.38236 * 120.00029 * 359.97438 * 21 20 19 23 23 H 0.97005 * 119.99871 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47087 * 299.99450 * 9 7 2 25 25 H 1.08994 * 109.46787 * 59.99985 * 9 7 2 26 26 H 1.08997 * 109.47536 * 299.99686 * 10 9 7 27 27 H 1.09006 * 109.47084 * 60.00138 * 10 9 7 28 28 H 1.00898 * 111.00289 * 279.44449 * 13 11 10 29 29 H 1.09001 * 109.47140 * 305.19142 * 14 13 11 30 30 H 1.09006 * 109.46708 * 65.18805 * 14 13 11 31 31 H 1.09002 * 109.47236 * 185.00536 * 15 14 13 32 32 H 1.09007 * 109.47214 * 305.00169 * 15 14 13 33 33 H 0.96699 * 114.00402 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.99951 * 359.97438 * 18 17 11 35 35 H 1.07993 * 120.00429 * 180.27630 * 19 18 17 36 36 H 1.07996 * 119.99965 * 179.83771 * 20 19 18 37 37 H 1.08000 * 120.00287 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00393 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 0.0036 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 1 5.9155 -2.0468 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 7.3923 -1.5020 -1.0917 15 6 7.8150 -0.7897 -2.3780 16 8 6.9708 0.3426 -2.5951 17 6 6.0539 -4.0519 0.1217 18 6 5.9550 -4.9169 -0.9520 19 6 6.4198 -6.2140 -0.8397 20 6 6.9753 -6.6486 0.3492 21 6 7.0696 -5.7851 1.4245 22 6 6.6087 -4.4868 1.3108 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6804 0.8888 26 1 3.6586 -3.1502 0.8892 27 1 3.6578 -3.1505 -0.8908 28 1 6.0144 -2.7282 -2.0062 29 1 7.3966 -0.7918 -0.2648 30 1 8.0901 -2.3119 -0.8787 31 1 8.8498 -0.4592 -2.2872 32 1 7.7255 -1.4763 -3.2199 33 1 7.1821 0.8432 -3.3950 34 1 5.5173 -4.5786 -1.8795 35 1 6.3466 -6.8885 -1.6799 36 1 7.3361 -7.6627 0.4377 37 1 7.5032 -6.1247 2.3535 38 1 6.6819 -3.8122 2.1511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309845100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = -33.656647 kcal Electronic energy + Delta-G solvation = -18046.147594 eV Core-core repulsion = 15273.978124 eV Total energy + Delta-G solvation = -2772.169471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.57726 -37.27559 -35.91321 -33.20822 -31.84386 -30.87527 -30.48624 -28.17385 -25.94109 -23.30073 -22.67143 -21.66818 -20.70363 -19.67774 -17.49191 -17.03409 -16.48942 -15.64787 -15.41489 -14.64244 -14.55468 -14.06185 -13.77212 -13.59359 -13.34293 -13.07221 -12.74647 -12.46119 -12.42150 -12.05952 -11.63727 -11.25095 -11.17811 -10.94455 -10.67203 -10.52797 -9.92978 -9.77946 -9.60968 -9.55994 -8.97765 -8.88945 -8.53703 -8.35939 -8.04164 -5.87769 -3.83617 1.40400 1.43171 3.48205 3.53453 3.62628 3.82580 4.35412 4.41939 4.63712 4.85844 4.92505 5.01173 5.15545 5.20611 5.24384 5.45619 5.48295 5.53165 5.55794 5.64242 5.74355 5.96381 6.00660 6.06656 6.14362 6.47824 6.50981 6.54536 6.63667 6.76182 7.03390 7.14453 7.34388 7.60388 7.66770 7.81253 7.82165 8.01139 8.72269 9.18270 9.76852 11.25987 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.006639 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.563044 B = 4216.699611 C = 5346.881859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.064 3.936 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.067 0.933 9 C -0.006 4.006 10 C -0.082 4.082 11 C 0.122 3.878 12 H 0.081 0.919 13 N -0.659 5.659 14 C 0.057 3.943 15 C 0.082 3.918 16 O -0.552 6.552 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.115 4.115 23 H 0.260 0.740 24 H 0.032 0.968 25 H 0.007 0.993 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.336 0.664 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.370 0.630 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.437 -8.697 -2.647 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.085 0.915 9 C -0.043 4.043 10 C -0.120 4.120 11 C 0.012 3.988 12 H 0.099 0.901 13 N -0.290 5.290 14 C -0.072 4.072 15 C 0.003 3.997 16 O -0.356 6.356 17 C -0.102 4.102 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.149 4.149 21 C -0.138 4.138 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.216 0.784 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.703 -8.165 -1.991 20.504 hybrid contribution 1.151 0.113 -0.452 1.241 sum 19.854 -8.051 -2.443 21.563 Atomic orbital electron populations 1.69939 1.06349 1.26612 1.52190 1.25008 0.94660 0.99183 0.94749 0.86710 0.80168 0.83392 0.78572 1.20292 1.21983 1.18987 1.21242 0.90049 0.94162 1.49871 0.91458 1.19483 0.96006 0.91895 0.96959 1.21445 0.89243 1.00569 1.00740 1.20918 0.97939 0.87551 0.92359 0.90125 1.60573 1.22515 1.39643 1.06250 1.22003 0.90102 0.97472 0.97659 1.22129 0.92241 0.88125 0.97162 1.86728 1.59034 1.42021 1.47808 1.21006 0.97038 0.98271 0.93882 1.20995 0.99855 0.93665 0.98963 1.21102 0.98894 0.95925 0.97735 1.21084 1.00771 0.99434 0.93645 1.21120 1.00223 0.93945 0.98545 1.21114 0.98800 0.96118 0.97352 0.93038 0.94949 0.97517 0.92805 0.92735 0.84501 0.90335 0.94434 0.93960 0.94143 0.78440 0.85981 0.86331 0.86521 0.86401 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.36 13.96 55.43 0.77 -28.59 16 2 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 23.38 27.47 -169.99 -4.67 18.71 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.86 6.54 56.52 0.37 -6.49 16 7 C -0.52 -15.47 9.66 -34.44 -0.33 -15.80 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 10 C -0.08 -1.70 4.73 -26.73 -0.13 -1.83 16 11 C 0.12 2.03 2.22 -68.87 -0.15 1.87 16 12 H 0.08 1.36 7.52 -51.93 -0.39 0.97 16 13 N -0.66 -10.46 5.62 -107.95 -0.61 -11.07 16 14 C 0.06 0.77 5.89 -3.82 -0.02 0.75 16 15 C 0.08 0.96 7.37 37.15 0.27 1.23 16 16 O -0.55 -7.95 13.61 -35.23 -0.48 -8.43 16 17 C -0.10 -1.44 4.75 -104.62 -0.50 -1.93 16 18 C -0.12 -1.54 8.95 -39.58 -0.35 -1.89 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 21 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.12 -1.52 9.67 -39.58 -0.38 -1.90 16 23 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 24 H 0.03 0.85 7.18 -51.93 -0.37 0.48 16 25 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.34 4.83 6.76 -39.29 -0.27 4.56 16 29 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 30 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.37 3.47 9.12 45.56 0.42 3.88 16 34 H 0.12 1.54 6.91 -52.49 -0.36 1.18 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.46 7.99 -52.49 -0.42 1.04 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -34.86 315.90 -8.36 -43.22 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.15 Total: 4.71 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.99 Total: -23.31 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.17 Total: -39.65 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.48 Total: -8.43 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.67 Total: 18.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.86 -8.36 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds