Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48494 * 109.47077 * 270.00001 * 3 2 1 5 5 H 1.48498 * 109.47387 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.46752 * 150.00696 * 3 2 1 7 7 C 1.37870 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 359.71825 * 7 2 1 9 9 C 1.50707 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46877 * 55.00315 * 11 10 9 13 13 N 1.46895 * 109.47066 * 295.00139 * 11 10 9 14 14 C 1.46907 * 111.00042 * 155.48653 * 13 11 10 15 15 C 1.52993 * 109.47242 * 185.18765 * 14 13 11 16 16 O 1.42893 * 109.47500 * 65.00189 * 15 14 13 17 17 C 1.50699 * 109.47254 * 175.00113 * 11 10 9 18 18 C 1.38233 * 119.99996 * 73.08117 * 17 11 10 19 19 C 1.38237 * 120.00087 * 179.79145 * 18 17 11 20 20 C 1.38237 * 119.99719 * 0.43500 * 19 18 17 21 21 C 1.38235 * 120.00141 * 359.81616 * 20 19 18 22 22 C 1.38236 * 120.00029 * 359.97438 * 21 20 19 23 23 H 0.97005 * 119.99871 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47087 * 299.99450 * 9 7 2 25 25 H 1.08994 * 109.46787 * 59.99985 * 9 7 2 26 26 H 1.08997 * 109.47536 * 299.99686 * 10 9 7 27 27 H 1.09006 * 109.47084 * 60.00138 * 10 9 7 28 28 H 1.00898 * 111.00289 * 279.44449 * 13 11 10 29 29 H 1.09001 * 109.47140 * 305.19142 * 14 13 11 30 30 H 1.09006 * 109.46708 * 65.18805 * 14 13 11 31 31 H 1.09002 * 109.47236 * 185.00536 * 15 14 13 32 32 H 1.09007 * 109.47214 * 305.00169 * 15 14 13 33 33 H 0.96699 * 114.00402 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.99951 * 359.97438 * 18 17 11 35 35 H 1.07993 * 120.00429 * 180.27630 * 19 18 17 36 36 H 1.07996 * 119.99965 * 179.83771 * 20 19 18 37 37 H 1.08000 * 120.00287 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00393 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 0.0036 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 1 5.9155 -2.0468 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 7.3923 -1.5020 -1.0917 15 6 7.8150 -0.7897 -2.3780 16 8 6.9708 0.3426 -2.5951 17 6 6.0539 -4.0519 0.1217 18 6 5.9550 -4.9169 -0.9520 19 6 6.4198 -6.2140 -0.8397 20 6 6.9753 -6.6486 0.3492 21 6 7.0696 -5.7851 1.4245 22 6 6.6087 -4.4868 1.3108 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6804 0.8888 26 1 3.6586 -3.1502 0.8892 27 1 3.6578 -3.1505 -0.8908 28 1 6.0144 -2.7282 -2.0062 29 1 7.3966 -0.7918 -0.2648 30 1 8.0901 -2.3119 -0.8787 31 1 8.8498 -0.4592 -2.2872 32 1 7.7255 -1.4763 -3.2199 33 1 7.1821 0.8432 -3.3950 34 1 5.5173 -4.5786 -1.8795 35 1 6.3466 -6.8885 -1.6799 36 1 7.3361 -7.6627 0.4377 37 1 7.5032 -6.1247 2.3535 38 1 6.6819 -3.8122 2.1511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309845100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = -59.103395 kcal Electronic energy + Delta-G solvation = -18047.251048 eV Core-core repulsion = 15273.978124 eV Total energy + Delta-G solvation = -2773.272925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61544 -38.30475 -37.10937 -35.23013 -33.43941 -31.99602 -31.77578 -29.40166 -27.59268 -24.76534 -23.69026 -22.66732 -22.24993 -21.19275 -18.88000 -18.46279 -17.93798 -16.77731 -16.49698 -16.17173 -15.68747 -15.49928 -15.13333 -14.88725 -14.69071 -14.24868 -14.15374 -13.92814 -13.52674 -13.44701 -13.38424 -12.82731 -12.46429 -12.32761 -11.94429 -11.84472 -11.69328 -11.52358 -11.42299 -11.21535 -10.82714 -10.71732 -9.81757 -9.61553 -9.21909 -8.26676 -6.28423 0.44638 0.50605 1.36789 1.39131 1.52841 2.39644 2.87837 3.09740 3.25428 3.52059 3.77114 3.96250 4.16531 4.25377 4.28708 4.30106 4.39309 4.53525 4.60301 4.65276 4.68487 4.77013 4.81711 4.95090 4.98702 5.10595 5.16799 5.26451 5.55772 5.58336 5.62151 5.65599 5.68999 5.75961 6.12969 6.19087 6.33853 6.55115 6.79438 7.05654 7.36001 8.90454 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.006639 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.563044 B = 4216.699611 C = 5346.881859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.529 4.529 8 H 0.029 0.971 9 C 0.005 3.995 10 C -0.073 4.073 11 C 0.136 3.864 12 H 0.074 0.926 13 N -0.679 5.679 14 C 0.057 3.943 15 C 0.082 3.918 16 O -0.588 6.588 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.128 4.128 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.004 0.996 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.342 0.658 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.389 0.611 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.108 -9.201 -2.846 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.567 4.567 8 H 0.047 0.953 9 C -0.032 4.032 10 C -0.112 4.112 11 C 0.026 3.974 12 H 0.093 0.907 13 N -0.310 5.310 14 C -0.072 4.072 15 C 0.004 3.996 16 O -0.395 6.395 17 C -0.118 4.118 18 C -0.147 4.147 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.147 4.147 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.022 0.978 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.162 0.838 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.393 -8.678 -2.204 23.191 hybrid contribution 0.277 0.155 -0.400 0.511 sum 21.670 -8.523 -2.604 23.431 Atomic orbital electron populations 1.70076 1.08148 1.27962 1.53345 1.25945 0.95544 1.03288 0.94274 0.85596 0.79040 0.78477 0.79050 1.19477 1.20835 1.17930 1.21603 0.92553 0.92868 1.49652 0.95277 1.19325 0.92829 0.94855 0.96223 1.21259 0.92857 0.97216 0.99829 1.20504 0.94587 0.89521 0.92748 0.90740 1.60501 1.24415 1.40047 1.06051 1.22052 0.89180 0.97681 0.98280 1.22233 0.93124 0.87691 0.96571 1.86655 1.60333 1.43112 1.49381 1.20755 0.98908 0.97042 0.95112 1.21100 1.00373 0.94488 0.98699 1.21409 0.98156 0.95455 0.98918 1.21488 0.99495 1.00660 0.92985 1.21439 0.99542 0.93183 0.99832 1.21278 0.99173 0.97237 0.97007 0.92612 0.95559 0.97773 0.93809 0.93610 0.83778 0.91978 0.92622 0.91190 0.92826 0.76259 0.86101 0.84058 0.83619 0.83949 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.87 13.96 21.44 0.30 -62.57 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.95 48.59 27.47 68.60 1.88 50.47 16 4 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.26 -12.50 6.54 99.48 0.65 -11.85 16 7 C -0.53 -32.79 9.66 25.60 0.25 -32.54 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.01 0.26 3.93 29.85 0.12 0.38 16 10 C -0.07 -3.12 4.73 30.60 0.14 -2.98 16 11 C 0.14 4.53 2.22 44.17 0.10 4.63 16 12 H 0.07 2.52 7.52 -2.39 -0.02 2.51 16 13 N -0.68 -21.16 5.62 -495.44 -2.78 -23.94 16 14 C 0.06 1.46 5.89 86.30 0.51 1.97 16 15 C 0.08 1.74 7.37 71.98 0.53 2.27 16 16 O -0.59 -16.03 13.61 -148.98 -2.03 -18.06 16 17 C -0.12 -3.25 4.75 -19.87 -0.09 -3.35 16 18 C -0.13 -3.24 8.95 22.27 0.20 -3.04 16 19 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 20 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 21 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 22 C -0.13 -3.20 9.67 22.27 0.22 -2.98 16 23 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 24 H 0.03 1.38 7.18 -2.39 -0.02 1.36 16 25 H 0.00 0.20 7.20 -2.39 -0.02 0.19 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.34 9.63 6.76 -89.70 -0.61 9.03 16 29 H 0.06 1.77 7.93 -2.39 -0.02 1.75 16 30 H 0.06 1.21 8.07 -2.38 -0.02 1.19 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.39 6.65 9.12 -74.06 -0.68 5.98 16 34 H 0.12 2.98 6.91 -2.91 -0.02 2.96 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.12 2.89 7.99 -2.91 -0.02 2.86 16 Total: -1.00 -76.12 315.90 0.18 -75.94 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.29 Total: 19.75 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 3.10 Total: -41.60 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.48 Total: -86.51 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -2.03 Total: -18.06 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.88 Total: 50.47 kcal Total: -76.12 0.18 -75.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.838 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds