Wall clock time and date at job start Mon Mar 30 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00017 * 2 1 4 4 C 1.38210 * 120.00266 * 180.27412 * 3 2 1 5 5 C 1.38260 * 119.99770 * 359.74561 * 4 3 2 6 6 C 1.38213 * 119.99796 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.00248 * 179.77019 * 2 1 3 8 8 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 9 9 F 1.39894 * 110.91624 * 66.18424 * 8 7 2 10 10 C 1.55157 * 111.00598 * 190.08912 * 8 7 2 11 11 C 1.54335 * 103.01961 * 153.37892 * 10 8 7 12 12 N 1.47017 * 107.26597 * 338.13995 * 11 10 8 13 13 C 1.36938 * 125.64655 * 178.85260 * 12 11 10 14 14 H 1.08001 * 120.00297 * 179.69301 * 13 12 11 15 15 C 1.38818 * 119.99786 * 359.41079 * 13 12 11 16 16 N 1.31614 * 119.99964 * 0.28078 * 15 13 12 17 17 Si 1.86801 * 119.99771 * 180.27744 * 15 13 12 18 18 H 1.48503 * 109.47252 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47053 * 120.00498 * 17 15 13 20 20 H 1.48503 * 109.46955 * 240.00287 * 17 15 13 21 21 C 1.47421 * 108.70609 * 358.58732 * 12 11 10 22 22 H 1.09002 * 109.47475 * 264.78407 * 1 2 3 23 23 H 1.09001 * 109.47186 * 24.78827 * 1 2 3 24 24 H 1.09007 * 109.47162 * 144.78328 * 1 2 3 25 25 H 1.08003 * 119.99624 * 0.02562 * 3 2 1 26 26 H 1.07994 * 120.00248 * 179.72216 * 4 3 2 27 27 H 1.08000 * 119.99890 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99730 * 179.97438 * 6 5 4 29 29 H 1.08997 * 110.71967 * 271.94233 * 10 8 7 30 30 H 1.08998 * 110.71629 * 35.03286 * 10 8 7 31 31 H 1.09005 * 109.98528 * 218.66184 * 11 10 8 32 32 H 1.09000 * 109.77500 * 97.49604 * 11 10 8 33 33 H 0.97004 * 120.00044 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.36827 * 143.19754 * 21 12 11 35 35 H 1.09005 * 110.36320 * 265.51699 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0061 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1969 0.0048 8 6 1.4446 -2.5020 0.0106 9 9 0.7375 -2.6758 -1.1839 10 6 2.4017 -3.6956 0.2690 11 6 1.4759 -4.7513 0.9097 12 7 0.3186 -4.0360 1.4671 13 6 -0.7470 -4.6152 2.1028 14 1 -1.5488 -3.9996 2.4829 15 6 -0.7995 -5.9942 2.2535 16 7 0.1777 -6.7444 1.7903 17 14 -2.2569 -6.7849 3.1139 18 1 -3.2129 -5.7307 3.5380 19 1 -2.9344 -7.7206 2.1808 20 1 -1.7821 -7.5320 4.3062 21 6 0.4985 -2.5915 1.2340 22 1 -0.3634 -0.0934 1.0234 23 1 -0.3633 0.9330 -0.4309 24 1 -0.3634 -0.8396 -0.5927 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1327 -0.0103 27 1 5.3517 0.0001 -0.0110 28 1 4.1206 -2.1322 -0.0021 29 1 2.8204 -4.0639 -0.6675 30 1 3.1958 -3.4107 0.9592 31 1 2.0047 -5.2773 1.7046 32 1 1.1435 -5.4595 0.1507 33 1 0.1412 -7.7080 1.8960 34 1 -0.4587 -2.1215 1.0085 35 1 0.9574 -2.1212 2.1037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334224012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:40 Heat of formation + Delta-G solvation = 2.104687 kcal Electronic energy + Delta-G solvation = -18507.591337 eV Core-core repulsion = 15613.512289 eV Total energy + Delta-G solvation = -2894.079048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.07027 -39.42194 -36.72175 -33.06553 -32.63874 -30.99551 -29.04253 -27.21232 -26.79851 -24.41502 -22.67094 -21.20580 -20.04731 -19.70114 -17.07336 -16.71746 -15.50647 -15.10689 -14.86188 -14.67165 -14.24561 -14.05117 -13.68410 -13.26888 -13.03372 -12.97077 -12.25493 -12.09806 -11.90131 -11.84603 -11.59414 -11.07804 -10.98753 -10.90655 -10.70911 -10.24367 -10.13011 -9.99213 -9.80306 -9.67664 -8.76010 -8.59912 -8.50418 -6.85916 -5.72123 -3.06235 1.39680 1.47889 3.40555 3.45702 3.48447 3.81964 4.45321 4.68192 4.79315 5.00624 5.03767 5.16642 5.26498 5.39586 5.43175 5.58934 5.64395 5.74444 5.78754 5.85389 5.96932 6.05466 6.17944 6.30737 6.32602 6.41058 6.51994 6.52363 6.57952 6.76284 6.87849 7.08830 7.51995 7.58305 7.80469 8.22859 9.19677 9.79460 10.44061 11.39966 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039376 B = 0.006129 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.915259 B = 4567.417021 C = 4888.964878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.132 4.132 6 C -0.099 4.099 7 C -0.098 4.098 8 C 0.142 3.858 9 F -0.195 7.195 10 C -0.164 4.164 11 C 0.177 3.823 12 N -0.602 5.602 13 C -0.228 4.228 14 H 0.080 0.920 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.124 3.876 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.252 0.748 34 H 0.056 0.944 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 13.658 -3.765 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.117 4.117 7 C -0.099 4.099 8 C 0.123 3.877 9 F -0.175 7.175 10 C -0.202 4.202 11 C 0.052 3.948 12 N -0.329 5.329 13 C -0.356 4.356 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.002 4.002 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.336 13.416 -3.733 15.299 hybrid contribution -0.641 -0.470 0.339 0.864 sum 5.695 12.945 -3.394 14.544 Atomic orbital electron populations 1.21101 0.91038 1.03191 1.03136 1.19819 0.96374 0.92342 0.97479 1.20999 0.94246 0.97223 1.02006 1.21113 0.94293 0.97907 1.00139 1.21090 0.99700 0.92429 1.01789 1.21209 0.93405 0.98616 0.98439 1.19982 0.93999 0.94054 1.01852 1.20730 0.92221 0.91906 0.82863 1.92807 1.80237 1.96232 1.48228 1.23574 0.98590 0.96449 1.01632 1.21196 0.86000 0.90843 0.96713 1.44446 1.21709 0.99169 1.67538 1.19100 0.97259 0.90181 1.29098 0.90238 1.24813 0.98423 0.96024 1.01091 1.69964 1.32033 1.04243 1.50677 0.86016 0.81587 0.79242 0.78745 1.20450 1.21690 1.21716 1.22175 0.96631 0.88662 0.92771 0.90499 0.91876 0.90083 0.86117 0.86296 0.86113 0.85256 0.90851 0.90486 0.93405 0.92997 0.93722 0.92576 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.11 36.00 0.29 -1.50 16 2 C -0.06 -0.89 5.79 -104.62 -0.61 -1.50 16 3 C -0.13 -1.59 9.68 -39.58 -0.38 -1.97 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 5 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 6 C -0.10 -1.42 8.96 -39.59 -0.35 -1.77 16 7 C -0.10 -1.61 5.09 -104.63 -0.53 -2.14 16 8 C 0.14 2.75 0.96 -89.62 -0.09 2.66 16 9 F -0.19 -4.12 15.60 2.25 0.04 -4.08 16 10 C -0.16 -3.19 5.14 -24.89 -0.13 -3.32 16 11 C 0.18 4.42 5.37 -3.06 -0.02 4.40 16 12 N -0.60 -15.81 3.39 -170.07 -0.58 -16.39 16 13 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 16 N -0.92 -27.38 10.31 55.49 0.57 -26.80 16 17 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.12 2.68 5.32 -2.53 -0.01 2.66 16 22 H 0.08 1.05 7.30 -51.93 -0.38 0.67 16 23 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 24 H 0.08 1.29 5.62 -51.93 -0.29 1.00 16 25 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.72 6.09 -52.49 -0.32 1.40 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.34 6.60 -51.93 -0.34 1.00 16 31 H 0.05 1.29 7.53 -51.93 -0.39 0.89 16 32 H 0.05 1.44 7.36 -51.93 -0.38 1.06 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.06 1.17 5.98 -51.93 -0.31 0.86 16 35 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -31.23 281.47 -8.11 -39.34 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.49 Total: -0.43 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.87 Total: -13.14 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.00 Total: -43.19 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.04 Total: -4.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.23 -8.11 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334224012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.449 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds