Wall clock time and date at job start Mon Mar 30 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00017 * 2 1 4 4 C 1.38210 * 120.00266 * 180.27412 * 3 2 1 5 5 C 1.38260 * 119.99770 * 359.74561 * 4 3 2 6 6 C 1.38213 * 119.99796 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.00248 * 179.77019 * 2 1 3 8 8 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 9 9 F 1.39894 * 110.91624 * 66.18424 * 8 7 2 10 10 C 1.55157 * 111.00598 * 190.08912 * 8 7 2 11 11 C 1.54335 * 103.01961 * 153.37892 * 10 8 7 12 12 N 1.47017 * 107.26597 * 338.13995 * 11 10 8 13 13 C 1.36938 * 125.64655 * 178.85260 * 12 11 10 14 14 H 1.08001 * 120.00297 * 179.69301 * 13 12 11 15 15 C 1.38818 * 119.99786 * 359.41079 * 13 12 11 16 16 N 1.31614 * 119.99964 * 0.28078 * 15 13 12 17 17 Si 1.86801 * 119.99771 * 180.27744 * 15 13 12 18 18 H 1.48503 * 109.47252 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47053 * 120.00498 * 17 15 13 20 20 H 1.48503 * 109.46955 * 240.00287 * 17 15 13 21 21 C 1.47421 * 108.70609 * 358.58732 * 12 11 10 22 22 H 1.09002 * 109.47475 * 264.78407 * 1 2 3 23 23 H 1.09001 * 109.47186 * 24.78827 * 1 2 3 24 24 H 1.09007 * 109.47162 * 144.78328 * 1 2 3 25 25 H 1.08003 * 119.99624 * 0.02562 * 3 2 1 26 26 H 1.07994 * 120.00248 * 179.72216 * 4 3 2 27 27 H 1.08000 * 119.99890 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99730 * 179.97438 * 6 5 4 29 29 H 1.08997 * 110.71967 * 271.94233 * 10 8 7 30 30 H 1.08998 * 110.71629 * 35.03286 * 10 8 7 31 31 H 1.09005 * 109.98528 * 218.66184 * 11 10 8 32 32 H 1.09000 * 109.77500 * 97.49604 * 11 10 8 33 33 H 0.97004 * 120.00044 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.36827 * 143.19754 * 21 12 11 35 35 H 1.09005 * 110.36320 * 265.51699 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 0.0001 -0.0061 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1969 0.0048 8 6 1.4446 -2.5020 0.0106 9 9 0.7375 -2.6758 -1.1839 10 6 2.4017 -3.6956 0.2690 11 6 1.4759 -4.7513 0.9097 12 7 0.3186 -4.0360 1.4671 13 6 -0.7470 -4.6152 2.1028 14 1 -1.5488 -3.9996 2.4829 15 6 -0.7995 -5.9942 2.2535 16 7 0.1777 -6.7444 1.7903 17 14 -2.2569 -6.7849 3.1139 18 1 -3.2129 -5.7307 3.5380 19 1 -2.9344 -7.7206 2.1808 20 1 -1.7821 -7.5320 4.3062 21 6 0.4985 -2.5915 1.2340 22 1 -0.3634 -0.0934 1.0234 23 1 -0.3633 0.9330 -0.4309 24 1 -0.3634 -0.8396 -0.5927 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1327 -0.0103 27 1 5.3517 0.0001 -0.0110 28 1 4.1206 -2.1322 -0.0021 29 1 2.8204 -4.0639 -0.6675 30 1 3.1958 -3.4107 0.9592 31 1 2.0047 -5.2773 1.7046 32 1 1.1435 -5.4595 0.1507 33 1 0.1412 -7.7080 1.8960 34 1 -0.4587 -2.1215 1.0085 35 1 0.9574 -2.1212 2.1037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334224012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:40 Heat of formation + Delta-G solvation = -15.244798 kcal Electronic energy + Delta-G solvation = -18508.343667 eV Core-core repulsion = 15613.512289 eV Total energy + Delta-G solvation = -2894.831378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.68478 -40.53300 -38.46509 -34.75009 -33.83064 -32.58021 -30.74639 -28.83594 -27.96138 -26.31758 -23.90136 -22.62572 -21.65592 -21.14589 -19.01415 -18.04949 -16.86624 -16.75228 -16.37593 -16.25187 -15.56269 -15.47673 -15.36315 -14.80121 -14.45223 -14.09564 -13.93906 -13.56849 -13.37339 -13.04976 -12.95865 -12.90815 -12.82342 -12.32058 -12.07855 -12.03624 -11.95115 -11.85886 -11.49482 -11.29586 -10.75132 -9.78199 -9.53329 -8.97688 -7.89240 -5.26499 0.36034 0.49361 1.44641 1.46493 1.56868 2.46017 2.81093 3.26172 3.30449 3.34940 3.62464 3.78694 3.98916 4.02561 4.09028 4.26488 4.45078 4.48720 4.57064 4.67542 4.73927 4.76326 4.81913 4.83774 4.94115 5.08396 5.17183 5.32925 5.38095 5.52587 5.58267 5.61271 5.66230 5.73095 6.11040 6.13443 7.03819 7.68877 8.33113 9.21950 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039376 B = 0.006129 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.915259 B = 4567.417021 C = 4888.964878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.125 4.125 8 C 0.150 3.850 9 F -0.210 7.210 10 C -0.150 4.150 11 C 0.184 3.816 12 N -0.626 5.626 13 C -0.246 4.246 14 H 0.085 0.915 15 C -0.065 4.065 16 N -0.952 5.952 17 Si 0.983 3.017 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.123 3.877 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.148 0.852 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.019 0.981 32 H 0.012 0.988 33 H 0.249 0.751 34 H 0.058 0.942 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.355 16.316 -3.644 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.126 4.126 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.125 4.125 8 C 0.131 3.869 9 F -0.191 7.191 10 C -0.188 4.188 11 C 0.059 3.941 12 N -0.352 5.352 13 C -0.375 4.375 14 H 0.103 0.897 15 C -0.258 4.258 16 N -0.601 5.601 17 Si 0.811 3.189 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.215 1.215 21 C -0.002 4.002 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.166 0.834 26 H 0.173 0.827 27 H 0.169 0.831 28 H 0.152 0.848 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.242 16.113 -3.616 18.032 hybrid contribution -0.883 -1.203 0.288 1.520 sum 6.360 14.909 -3.328 16.547 Atomic orbital electron populations 1.21059 0.91151 1.03451 1.02632 1.19980 0.96613 0.92851 0.98274 1.21332 0.95025 0.97223 1.00858 1.21585 0.94065 0.99195 0.97757 1.21460 1.01274 0.91694 1.00311 1.21361 0.92607 1.00091 0.98827 1.19791 0.94801 0.92695 1.05255 1.20646 0.91354 0.93737 0.81133 1.92775 1.80746 1.96493 1.49048 1.23457 0.98070 0.94913 1.02385 1.20931 0.86484 0.91826 0.94851 1.44759 1.21607 1.01369 1.67453 1.19514 0.98066 0.90798 1.29088 0.89729 1.25716 1.01282 0.96597 1.02206 1.70187 1.33893 1.04076 1.51946 0.84946 0.78437 0.78233 0.77312 1.18801 1.21874 1.21547 1.22307 0.97613 0.86084 0.94204 0.90849 0.89231 0.92739 0.83448 0.82736 0.83133 0.84809 0.89329 0.88023 0.96312 0.97001 0.94216 0.92390 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.11 71.23 0.58 -2.83 16 2 C -0.08 -2.14 5.79 -19.87 -0.12 -2.25 16 3 C -0.13 -2.69 9.68 22.27 0.22 -2.47 16 4 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 5 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 6 C -0.11 -2.92 8.96 22.27 0.20 -2.72 16 7 C -0.12 -3.93 5.09 -19.87 -0.10 -4.03 16 8 C 0.15 5.83 0.96 -10.15 -0.01 5.82 16 9 F -0.21 -9.08 15.60 44.97 0.70 -8.38 16 10 C -0.15 -5.88 5.14 31.79 0.16 -5.72 16 11 C 0.18 9.60 5.37 86.73 0.47 10.06 16 12 N -0.63 -33.91 3.39 -691.96 -2.35 -36.25 16 13 C -0.25 -14.30 10.28 84.03 0.86 -13.43 16 14 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 15 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 16 N -0.95 -58.81 10.31 21.65 0.22 -58.59 16 17 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 C 0.12 5.40 5.32 86.86 0.46 5.86 16 22 H 0.07 1.97 7.30 -2.39 -0.02 1.95 16 23 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 24 H 0.05 1.74 5.62 -2.38 -0.01 1.73 16 25 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 26 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.13 3.27 6.09 -2.91 -0.02 3.25 16 29 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.10 3.46 6.60 -2.39 -0.02 3.45 16 31 H 0.02 1.06 7.53 -2.38 -0.02 1.04 16 32 H 0.01 0.69 7.36 -2.39 -0.02 0.68 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.06 2.48 5.98 -2.39 -0.01 2.47 16 35 H 0.04 1.75 8.03 -2.38 -0.02 1.73 16 Total: -1.00 -69.99 281.47 5.32 -64.66 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.09 Total: 9.08 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.64 Total: -19.22 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.13 Total: -94.84 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.70 Total: -8.38 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -69.99 5.32 -64.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334224012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.416 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds