Wall clock time and date at job start Mon Mar 30 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 120.00030 * 2 1 4 4 C 1.38208 * 119.99961 * 180.27522 * 3 2 1 5 5 C 1.38261 * 120.00143 * 359.74950 * 4 3 2 6 6 C 1.38208 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00502 * 179.76699 * 2 1 3 8 8 C 1.50701 * 119.99782 * 0.02562 * 7 2 1 9 9 F 1.39904 * 110.64180 * 68.75034 * 8 7 2 10 10 C 1.55151 * 110.71748 * 305.60838 * 8 7 2 11 11 C 1.54911 * 101.58333 * 205.95664 * 10 8 7 12 12 N 1.47424 * 104.82904 * 37.00842 * 11 10 8 13 13 C 1.36945 * 125.64795 * 155.91123 * 12 11 10 14 14 H 1.07997 * 119.99810 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99833 * 359.97438 * 13 12 11 16 16 N 1.31622 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47120 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47293 * 119.99285 * 17 15 13 20 20 H 1.48494 * 109.47237 * 239.99947 * 17 15 13 21 21 C 1.47487 * 108.76300 * 335.89401 * 12 11 10 22 22 H 1.08994 * 109.47136 * 264.46919 * 1 2 3 23 23 H 1.08999 * 109.47420 * 24.47157 * 1 2 3 24 24 H 1.08999 * 109.47004 * 144.47442 * 1 2 3 25 25 H 1.07997 * 119.99556 * 359.97438 * 3 2 1 26 26 H 1.08007 * 119.99980 * 179.72015 * 4 3 2 27 27 H 1.08000 * 119.99589 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.99708 * 179.97438 * 6 5 4 29 29 H 1.08999 * 111.00987 * 324.03540 * 10 8 7 30 30 H 1.09001 * 111.00549 * 87.84981 * 10 8 7 31 31 H 1.08995 * 110.36888 * 155.84577 * 11 10 8 32 32 H 1.09003 * 110.36733 * 278.17349 * 11 10 8 33 33 H 0.96995 * 120.00449 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.03100 * 241.66260 * 21 12 11 35 35 H 1.09000 * 109.96019 * 120.34489 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0057 5 6 4.2717 0.0000 -0.0063 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0049 8 6 1.4447 -2.5020 0.0096 9 9 0.7876 -2.6966 -1.2101 10 6 0.4380 -2.5504 1.1892 11 6 0.3093 -4.0759 1.4259 12 7 1.6637 -4.6095 1.1931 13 6 2.1615 -5.7762 1.7093 14 1 3.1712 -6.0815 1.4779 15 6 1.3682 -6.5662 2.5300 16 7 0.1378 -6.1938 2.8124 17 14 2.0470 -8.1580 3.2336 18 1 3.4443 -8.3488 2.7682 19 1 2.0234 -8.0933 4.7170 20 1 1.2129 -9.2975 2.7744 21 6 2.3948 -3.6799 0.3119 22 1 -0.3633 -0.0990 1.0228 23 1 -0.3634 0.9353 -0.4257 24 1 -0.3633 -0.8364 -0.5971 25 1 1.6582 2.1327 -0.0004 26 1 4.1204 2.1328 -0.0103 27 1 5.3517 0.0001 -0.0112 28 1 4.1207 -2.1322 -0.0013 29 1 0.8432 -2.0513 2.0695 30 1 -0.5202 -2.1167 0.9032 31 1 -0.0063 -4.2757 2.4498 32 1 -0.3967 -4.5113 0.7186 33 1 -0.4164 -6.7456 3.3861 34 1 2.6691 -4.1825 -0.6156 35 1 3.2892 -3.3146 0.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334224016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:44 Heat of formation + Delta-G solvation = 5.968310 kcal Electronic energy + Delta-G solvation = -18492.524832 eV Core-core repulsion = 15598.613323 eV Total energy + Delta-G solvation = -2893.911509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.15853 -39.43626 -36.69207 -33.20528 -32.49379 -30.98223 -29.10838 -27.55394 -26.25099 -24.72371 -22.54957 -21.14004 -20.22106 -19.60746 -17.13652 -16.68373 -15.63017 -15.13617 -14.80903 -14.63855 -14.22345 -14.16059 -13.68478 -13.18976 -13.03738 -12.97115 -12.31596 -12.23453 -11.88641 -11.79467 -11.44590 -11.04605 -10.98312 -10.90192 -10.88284 -10.41881 -10.10829 -9.91819 -9.79557 -9.54230 -8.74691 -8.65410 -8.49551 -6.88008 -5.67913 -3.10315 1.41152 1.49742 3.39196 3.44350 3.47116 3.83514 4.42582 4.67752 4.82006 5.00996 5.04295 5.20629 5.25172 5.38448 5.42539 5.53603 5.62179 5.75153 5.79270 5.80963 5.95327 6.07341 6.18295 6.28026 6.40970 6.46736 6.48782 6.57679 6.60886 6.77241 6.86786 7.10855 7.48414 7.58087 7.80394 8.30911 9.17971 9.77874 10.41789 11.36332 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035625 B = 0.006223 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.775829 B = 4498.659814 C = 4888.326511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.098 4.098 8 C 0.145 3.855 9 F -0.200 7.200 10 C -0.159 4.159 11 C 0.151 3.849 12 N -0.602 5.602 13 C -0.223 4.223 14 H 0.079 0.921 15 C -0.011 4.011 16 N -0.922 5.922 17 Si 0.917 3.083 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.116 3.884 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.017 0.983 33 H 0.252 0.748 34 H 0.035 0.965 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 13.919 -4.617 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.117 4.117 7 C -0.098 4.098 8 C 0.127 3.873 9 F -0.180 7.180 10 C -0.198 4.198 11 C 0.026 3.974 12 N -0.328 5.328 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.747 3.253 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.010 4.010 22 H 0.095 0.905 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.273 13.715 -4.519 14.806 hybrid contribution 0.350 -0.797 0.173 0.888 sum 3.622 12.917 -4.346 14.102 Atomic orbital electron populations 1.21087 0.91189 1.02941 1.02947 1.19767 0.96260 0.92306 0.97860 1.20979 0.94261 0.97154 1.02175 1.21115 0.94290 0.97905 1.00147 1.21107 0.99771 0.92394 1.01589 1.21327 0.93550 0.98794 0.98021 1.19973 0.94008 0.93982 1.01873 1.20532 0.92966 0.92347 0.81479 1.92812 1.82644 1.96056 1.46500 1.23781 0.97644 1.02309 0.96034 1.22019 0.86402 0.85226 1.03760 1.44574 1.10935 1.22498 1.54810 1.19129 0.97501 0.95674 1.22805 0.90272 1.24799 0.96099 0.99276 1.00431 1.69787 1.07651 1.38334 1.41282 0.85965 0.77924 0.82840 0.78563 1.20482 1.21678 1.21688 1.22044 0.94103 0.89661 0.95195 0.90538 0.91963 0.90347 0.86162 0.86299 0.86066 0.84910 0.90514 0.90525 0.87014 0.96468 0.93671 0.94668 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.05 36.00 0.29 -1.35 16 2 C -0.06 -0.91 5.78 -104.62 -0.60 -1.51 16 3 C -0.13 -1.60 9.68 -39.58 -0.38 -1.99 16 4 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 5 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 6 C -0.10 -1.51 8.90 -39.59 -0.35 -1.87 16 7 C -0.10 -1.63 5.10 -104.62 -0.53 -2.17 16 8 C 0.15 2.82 0.93 -89.94 -0.08 2.73 16 9 F -0.20 -4.09 15.74 2.25 0.04 -4.06 16 10 C -0.16 -3.13 4.80 -24.58 -0.12 -3.25 16 11 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 12 N -0.60 -15.81 3.41 -169.70 -0.58 -16.39 16 13 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.98 10.09 55.49 0.56 -26.42 16 17 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C 0.12 2.54 5.99 -2.81 -0.02 2.52 16 22 H 0.08 0.96 7.24 -51.93 -0.38 0.58 16 23 H 0.06 0.66 8.05 -51.93 -0.42 0.25 16 24 H 0.08 1.14 5.61 -51.93 -0.29 0.85 16 25 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.98 5.86 -52.49 -0.31 1.68 16 29 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 30 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 31 H 0.11 3.06 5.87 -51.93 -0.31 2.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.05 0.95 5.71 -51.93 -0.30 0.66 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -30.69 280.00 -8.03 -38.72 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.38 Total: 0.65 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.86 Total: -13.82 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.02 Total: -42.81 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.69 -8.03 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334224016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.692 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds