Wall clock time and date at job start Mon Mar 30 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 120.00030 * 2 1 4 4 C 1.38208 * 119.99961 * 180.27522 * 3 2 1 5 5 C 1.38261 * 120.00143 * 359.74950 * 4 3 2 6 6 C 1.38208 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00502 * 179.76699 * 2 1 3 8 8 C 1.50701 * 119.99782 * 0.02562 * 7 2 1 9 9 F 1.39904 * 110.64180 * 68.75034 * 8 7 2 10 10 C 1.55151 * 110.71748 * 305.60838 * 8 7 2 11 11 C 1.54911 * 101.58333 * 205.95664 * 10 8 7 12 12 N 1.47424 * 104.82904 * 37.00842 * 11 10 8 13 13 C 1.36945 * 125.64795 * 155.91123 * 12 11 10 14 14 H 1.07997 * 119.99810 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99833 * 359.97438 * 13 12 11 16 16 N 1.31622 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47120 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47293 * 119.99285 * 17 15 13 20 20 H 1.48494 * 109.47237 * 239.99947 * 17 15 13 21 21 C 1.47487 * 108.76300 * 335.89401 * 12 11 10 22 22 H 1.08994 * 109.47136 * 264.46919 * 1 2 3 23 23 H 1.08999 * 109.47420 * 24.47157 * 1 2 3 24 24 H 1.08999 * 109.47004 * 144.47442 * 1 2 3 25 25 H 1.07997 * 119.99556 * 359.97438 * 3 2 1 26 26 H 1.08007 * 119.99980 * 179.72015 * 4 3 2 27 27 H 1.08000 * 119.99589 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.99708 * 179.97438 * 6 5 4 29 29 H 1.08999 * 111.00987 * 324.03540 * 10 8 7 30 30 H 1.09001 * 111.00549 * 87.84981 * 10 8 7 31 31 H 1.08995 * 110.36888 * 155.84577 * 11 10 8 32 32 H 1.09003 * 110.36733 * 278.17349 * 11 10 8 33 33 H 0.96995 * 120.00449 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.03100 * 241.66260 * 21 12 11 35 35 H 1.09000 * 109.96019 * 120.34489 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0057 5 6 4.2717 0.0000 -0.0063 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0049 8 6 1.4447 -2.5020 0.0096 9 9 0.7876 -2.6966 -1.2101 10 6 0.4380 -2.5504 1.1892 11 6 0.3093 -4.0759 1.4259 12 7 1.6637 -4.6095 1.1931 13 6 2.1615 -5.7762 1.7093 14 1 3.1712 -6.0815 1.4779 15 6 1.3682 -6.5662 2.5300 16 7 0.1378 -6.1938 2.8124 17 14 2.0470 -8.1580 3.2336 18 1 3.4443 -8.3488 2.7682 19 1 2.0234 -8.0933 4.7170 20 1 1.2129 -9.2975 2.7744 21 6 2.3948 -3.6799 0.3119 22 1 -0.3633 -0.0990 1.0228 23 1 -0.3634 0.9353 -0.4257 24 1 -0.3633 -0.8364 -0.5971 25 1 1.6582 2.1327 -0.0004 26 1 4.1204 2.1328 -0.0103 27 1 5.3517 0.0001 -0.0112 28 1 4.1207 -2.1322 -0.0013 29 1 0.8432 -2.0513 2.0695 30 1 -0.5202 -2.1167 0.9032 31 1 -0.0063 -4.2757 2.4498 32 1 -0.3967 -4.5113 0.7186 33 1 -0.4164 -6.7456 3.3861 34 1 2.6691 -4.1825 -0.6156 35 1 3.2892 -3.3146 0.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334224016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:44 Heat of formation + Delta-G solvation = -10.728799 kcal Electronic energy + Delta-G solvation = -18493.248873 eV Core-core repulsion = 15598.613323 eV Total energy + Delta-G solvation = -2894.635550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.75730 -40.57275 -38.43932 -34.80245 -33.80794 -32.48793 -30.91684 -28.95140 -27.54629 -26.59097 -23.91380 -22.45239 -21.89248 -21.07476 -19.05005 -18.10443 -16.98735 -16.82334 -16.33633 -16.11630 -15.59235 -15.55457 -15.29339 -14.69686 -14.50272 -14.19031 -14.07029 -13.53094 -13.27050 -13.08360 -12.90194 -12.83708 -12.69864 -12.46605 -12.29273 -12.03521 -11.96039 -11.77362 -11.48114 -11.18871 -10.80195 -9.79111 -9.53938 -8.98246 -7.82267 -5.28654 0.34992 0.47817 1.45891 1.47529 1.57959 2.45336 2.79706 3.23891 3.29054 3.36889 3.60838 3.76414 3.96422 4.02337 4.05796 4.22582 4.44610 4.50689 4.57743 4.68674 4.72882 4.79727 4.82551 4.84839 4.92087 5.06524 5.19700 5.32911 5.40843 5.48820 5.57269 5.60001 5.69792 5.70437 6.10555 6.22078 7.03493 7.67991 8.32105 9.20571 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035625 B = 0.006223 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.775829 B = 4498.659814 C = 4888.326511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.131 4.131 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.154 3.846 9 F -0.210 7.210 10 C -0.140 4.140 11 C 0.152 3.848 12 N -0.624 5.624 13 C -0.244 4.244 14 H 0.084 0.916 15 C -0.066 4.066 16 N -0.950 5.950 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.292 1.292 21 C 0.111 3.889 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.085 0.915 32 H -0.014 1.014 33 H 0.250 0.750 34 H 0.027 0.973 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 16.242 -4.659 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.149 4.149 6 C -0.136 4.136 7 C -0.126 4.126 8 C 0.136 3.864 9 F -0.191 7.191 10 C -0.179 4.179 11 C 0.027 3.973 12 N -0.350 5.350 13 C -0.372 4.372 14 H 0.102 0.898 15 C -0.258 4.258 16 N -0.599 5.599 17 Si 0.814 3.186 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.219 1.219 21 C -0.014 4.014 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.169 0.831 26 H 0.173 0.827 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.004 0.996 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.619 16.058 -4.580 17.326 hybrid contribution -0.028 -1.458 0.137 1.465 sum 4.591 14.600 -4.444 15.937 Atomic orbital electron populations 1.21096 0.90509 1.03587 1.03020 1.19986 0.97012 0.92376 0.98007 1.21364 0.94866 0.97400 1.00712 1.21584 0.94284 0.98943 0.97760 1.21427 1.01170 0.91765 1.00489 1.21388 0.93179 0.99814 0.99214 1.19804 0.94547 0.92996 1.05216 1.20410 0.92232 0.93114 0.80652 1.92788 1.82887 1.96250 1.47135 1.23602 0.99247 0.98251 0.96762 1.21798 0.85574 0.88742 1.01145 1.44879 1.11692 1.22888 1.55576 1.19522 0.97931 0.96738 1.23018 0.89833 1.25698 0.96482 1.02653 1.00961 1.70029 1.08763 1.39363 1.41760 0.84902 0.77783 0.78395 0.77559 1.19003 1.21373 1.21892 1.22210 0.95089 0.89933 0.94155 0.90170 0.89211 0.92381 0.83082 0.82673 0.83502 0.85729 0.89778 0.88284 0.89743 0.99648 0.94063 0.95531 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.05 71.23 0.57 -2.46 16 2 C -0.07 -1.99 5.78 -19.87 -0.11 -2.11 16 3 C -0.13 -2.65 9.68 22.27 0.22 -2.43 16 4 C -0.11 -2.08 10.05 22.27 0.22 -1.85 16 5 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 6 C -0.12 -3.45 8.90 22.27 0.20 -3.26 16 7 C -0.12 -4.05 5.10 -19.87 -0.10 -4.16 16 8 C 0.15 6.04 0.93 -10.35 -0.01 6.03 16 9 F -0.21 -8.78 15.74 44.97 0.71 -8.07 16 10 C -0.14 -5.60 4.80 31.99 0.15 -5.44 16 11 C 0.15 7.94 5.89 86.86 0.51 8.45 16 12 N -0.62 -33.89 3.41 -690.80 -2.35 -36.24 16 13 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 14 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 15 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 16 N -0.95 -57.46 10.09 21.65 0.22 -57.24 16 17 Si 0.99 46.11 29.55 68.60 2.03 48.14 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 21 C 0.11 4.99 5.99 86.64 0.52 5.51 16 22 H 0.08 1.85 7.24 -2.39 -0.02 1.83 16 23 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 24 H 0.06 1.63 5.61 -2.39 -0.01 1.62 16 25 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 26 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 27 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.12 3.70 5.86 -2.91 -0.02 3.68 16 29 H 0.08 3.23 8.04 -2.39 -0.02 3.21 16 30 H 0.10 3.46 5.95 -2.39 -0.01 3.45 16 31 H 0.08 4.87 5.87 -2.39 -0.01 4.85 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.03 1.22 8.11 -2.39 -0.02 1.21 16 35 H 0.06 2.58 5.71 -2.39 -0.01 2.57 16 Total: -1.00 -68.22 280.00 5.41 -62.81 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.09 Total: 11.54 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.72 Total: -20.92 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -2.13 Total: -93.48 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.71 Total: -8.07 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.22 5.41 -62.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334224016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.077 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds