Wall clock time and date at job start Mon Mar 30 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48507 * 109.46775 * 239.99565 * 3 2 1 5 5 H 1.48496 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47164 * 120.00167 * 3 2 1 7 7 C 1.38955 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99652 * 198.37606 * 7 2 1 9 9 N 1.37097 * 120.00001 * 18.37544 * 7 2 1 10 10 C 1.34780 * 119.99853 * 44.18139 * 9 7 2 11 11 O 1.21294 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99905 * 179.97438 * 10 9 7 13 13 H 1.08994 * 115.55198 * 325.59275 * 12 10 9 14 14 C 1.53005 * 117.51537 * 111.28426 * 12 10 9 15 15 C 1.52989 * 117.49833 * 179.91287 * 12 10 9 16 16 C 1.52997 * 138.58852 * 121.59798 * 15 12 10 17 17 C 1.52991 * 138.58965 * 23.38408 * 15 12 10 18 18 C 1.46496 * 120.00281 * 224.18067 * 9 7 2 19 19 C 1.54267 * 110.03142 * 52.46991 * 18 9 7 20 20 C 1.54891 * 104.19765 * 217.10874 * 19 18 9 21 21 C 1.54886 * 102.74805 * 37.93986 * 20 19 18 22 22 C 1.53879 * 110.03278 * 295.30600 * 18 9 7 23 23 H 0.97001 * 120.00559 * 354.95860 * 1 2 3 24 24 H 1.08997 * 117.50177 * 214.96877 * 14 12 10 25 25 H 1.09003 * 117.49815 * 0.02562 * 14 12 10 26 26 H 1.09001 * 117.49583 * 336.60015 * 16 15 12 27 27 H 1.08997 * 117.50036 * 121.61428 * 16 15 12 28 28 H 1.09001 * 117.50591 * 238.37976 * 17 15 12 29 29 H 1.09006 * 117.50211 * 23.38255 * 17 15 12 30 30 H 1.09003 * 110.01849 * 173.90983 * 18 9 7 31 31 H 1.09008 * 110.48468 * 335.78430 * 19 18 9 32 32 H 1.08996 * 110.48824 * 98.42393 * 19 18 9 33 33 H 1.09007 * 110.75354 * 279.62386 * 20 19 18 34 34 H 1.09003 * 110.91387 * 156.33007 * 20 19 18 35 35 H 1.08999 * 110.48458 * 203.37826 * 21 20 19 36 36 H 1.09000 * 110.48364 * 80.74336 * 21 20 19 37 37 H 1.09000 * 110.02847 * 238.56883 * 22 18 9 38 38 H 1.09002 * 110.02875 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0475 -1.2270 0.2954 9 7 1.3758 -2.3606 -0.3732 10 6 0.5803 -2.3723 -1.4612 11 8 0.4248 -1.3593 -2.1098 12 6 -0.1151 -3.6445 -1.8723 13 1 0.4404 -4.5642 -1.6894 14 6 -1.6372 -3.6974 -1.7252 15 6 -1.0061 -3.5926 -3.1150 16 6 -1.1141 -4.2775 -4.4788 17 6 -1.1580 -2.7511 -4.3836 18 6 1.5640 -3.5843 0.4098 19 6 1.2671 -3.3099 1.8986 20 6 2.3108 -4.1660 2.6581 21 6 3.5753 -4.0266 1.7747 22 6 3.0317 -4.0400 0.3311 23 1 -0.4851 0.8368 0.0738 24 1 -2.0829 -4.6520 -1.4455 25 1 -2.1358 -2.8118 -1.3312 26 1 -0.2108 -4.7306 -4.8874 27 1 -2.0455 -4.7943 -4.7101 28 1 -2.1182 -2.2637 -4.5524 29 1 -0.2836 -2.1996 -4.7295 30 1 0.9082 -4.3708 0.0363 31 1 1.4028 -2.2525 2.1260 32 1 0.2558 -3.6287 2.1509 33 1 1.9906 -5.2066 2.7130 34 1 2.4905 -3.7656 3.6559 35 1 4.2485 -4.8685 1.9366 36 1 4.0837 -3.0851 1.9822 37 1 3.0880 -5.0480 -0.0799 38 1 3.6037 -3.3509 -0.2902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335526298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:09 Heat of formation + Delta-G solvation = 29.374254 kcal Electronic energy + Delta-G solvation = -19076.960843 eV Core-core repulsion = 16307.524597 eV Total energy + Delta-G solvation = -2769.436246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.04274 -37.52995 -36.03705 -33.15555 -32.10166 -31.16917 -27.99806 -26.79561 -25.24561 -22.50136 -21.95074 -20.05562 -19.83610 -19.45477 -18.03879 -16.37968 -15.86667 -14.99428 -14.78685 -14.56308 -14.35439 -13.84518 -13.45975 -13.03482 -12.71039 -12.63894 -11.62433 -11.36460 -11.21486 -11.09195 -10.90406 -10.74557 -10.68134 -10.55380 -10.50473 -10.40584 -10.18380 -10.02835 -9.76639 -9.54947 -9.43228 -9.26347 -8.61559 -7.88172 -6.95265 -6.02151 -3.74794 3.34338 3.41535 3.45355 3.92028 4.11099 4.37228 4.62685 4.85037 5.14495 5.23160 5.30215 5.33441 5.44285 5.53494 5.64684 5.90823 5.96322 6.01949 6.06240 6.12964 6.15671 6.19055 6.21771 6.26758 6.30476 6.37879 6.39322 6.49310 6.53608 6.62707 6.67861 6.70980 6.86775 7.03304 7.29070 7.72762 8.40075 9.18859 9.32119 9.79516 10.46307 11.07272 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.010554 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.271416 B = 2652.496314 C = 3934.481141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.340 4.340 8 H 0.075 0.925 9 N -0.447 5.447 10 C 0.505 3.495 11 O -0.530 6.530 12 C -0.124 4.124 13 H 0.104 0.896 14 C -0.108 4.108 15 C -0.200 4.200 16 C -0.141 4.141 17 C -0.112 4.112 18 C 0.130 3.870 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.133 4.133 23 H 0.262 0.738 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -9.690 0.122 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.467 4.467 8 H 0.093 0.907 9 N -0.169 5.169 10 C 0.291 3.709 11 O -0.407 6.407 12 C -0.146 4.146 13 H 0.122 0.878 14 C -0.145 4.145 15 C -0.201 4.201 16 C -0.177 4.177 17 C -0.149 4.149 18 C 0.025 3.975 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.172 4.172 23 H 0.072 0.928 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.141 -9.015 -0.287 9.021 hybrid contribution 0.368 0.704 0.188 0.816 sum 0.509 -8.311 -0.099 8.328 Atomic orbital electron populations 1.69816 1.06447 1.27160 1.43289 1.25203 0.94739 0.99141 0.94602 0.86360 0.79348 0.82427 0.78351 1.20123 1.21385 1.20519 1.18726 0.94442 0.83955 1.49596 0.90733 1.43286 1.44309 1.07748 1.21512 1.19010 0.82865 0.87354 0.81651 1.90506 1.62483 1.33992 1.53714 1.22191 0.93483 0.99615 0.99301 0.87778 1.22571 0.94270 1.02381 0.95284 1.21077 1.06453 1.07250 0.85325 1.22682 1.01975 0.96168 0.96907 1.22429 1.02587 0.92128 0.97724 1.21680 0.94500 0.89037 0.92284 1.22612 0.96973 1.02134 0.94403 1.22450 0.96221 0.99221 0.98224 1.22257 0.97044 1.00785 0.95389 1.22518 0.97765 1.00047 0.96844 0.92811 0.89126 0.88119 0.89202 0.89195 0.89315 0.88497 0.91448 0.88940 0.93005 0.92580 0.92391 0.92973 0.91682 0.93023 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.66 11.74 55.50 0.65 -24.01 16 2 C 0.07 2.06 4.38 -17.47 -0.08 1.98 16 3 Si 0.91 22.19 29.59 -169.99 -5.03 17.16 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.34 -9.21 7.21 -14.93 -0.11 -9.32 16 8 H 0.08 1.97 7.52 -52.49 -0.39 1.58 16 9 N -0.45 -11.10 2.42 -106.54 -0.26 -11.35 16 10 C 0.50 13.01 6.75 -10.98 -0.07 12.94 16 11 O -0.53 -15.80 14.00 5.55 0.08 -15.72 16 12 C -0.12 -2.56 4.94 -91.77 -0.45 -3.01 16 13 H 0.10 1.90 6.78 -51.93 -0.35 1.55 16 14 C -0.11 -2.00 10.24 -26.73 -0.27 -2.28 16 15 C -0.20 -3.78 5.05 -154.52 -0.78 -4.56 16 16 C -0.14 -2.10 10.53 -26.73 -0.28 -2.39 16 17 C -0.11 -2.00 10.16 -26.74 -0.27 -2.27 16 18 C 0.13 2.60 3.15 -66.81 -0.21 2.39 16 19 C -0.12 -2.34 6.39 -25.07 -0.16 -2.50 16 20 C -0.12 -1.87 6.91 -24.74 -0.17 -2.04 16 21 C -0.12 -1.81 6.83 -25.08 -0.17 -1.98 16 22 C -0.13 -2.33 6.27 -25.61 -0.16 -2.49 16 23 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.07 1.25 5.61 -51.93 -0.29 0.96 16 31 H 0.09 2.07 6.82 -51.92 -0.35 1.72 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.42 7.32 -51.93 -0.38 1.04 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -31.74 307.95 -9.09 -40.83 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.98 Total: 3.99 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.19 Total: -15.53 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.39 Total: -35.36 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.74 -9.09 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335526298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.205 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds