Wall clock time and date at job start Mon Mar 30 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48507 * 109.46775 * 239.99565 * 3 2 1 5 5 H 1.48496 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47164 * 120.00167 * 3 2 1 7 7 C 1.38955 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99652 * 198.37606 * 7 2 1 9 9 N 1.37097 * 120.00001 * 18.37544 * 7 2 1 10 10 C 1.34780 * 119.99853 * 44.18139 * 9 7 2 11 11 O 1.21294 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99905 * 179.97438 * 10 9 7 13 13 H 1.08994 * 115.55198 * 325.59275 * 12 10 9 14 14 C 1.53005 * 117.51537 * 111.28426 * 12 10 9 15 15 C 1.52989 * 117.49833 * 179.91287 * 12 10 9 16 16 C 1.52997 * 138.58852 * 121.59798 * 15 12 10 17 17 C 1.52991 * 138.58965 * 23.38408 * 15 12 10 18 18 C 1.46496 * 120.00281 * 224.18067 * 9 7 2 19 19 C 1.54267 * 110.03142 * 52.46991 * 18 9 7 20 20 C 1.54891 * 104.19765 * 217.10874 * 19 18 9 21 21 C 1.54886 * 102.74805 * 37.93986 * 20 19 18 22 22 C 1.53879 * 110.03278 * 295.30600 * 18 9 7 23 23 H 0.97001 * 120.00559 * 354.95860 * 1 2 3 24 24 H 1.08997 * 117.50177 * 214.96877 * 14 12 10 25 25 H 1.09003 * 117.49815 * 0.02562 * 14 12 10 26 26 H 1.09001 * 117.49583 * 336.60015 * 16 15 12 27 27 H 1.08997 * 117.50036 * 121.61428 * 16 15 12 28 28 H 1.09001 * 117.50591 * 238.37976 * 17 15 12 29 29 H 1.09006 * 117.50211 * 23.38255 * 17 15 12 30 30 H 1.09003 * 110.01849 * 173.90983 * 18 9 7 31 31 H 1.09008 * 110.48468 * 335.78430 * 19 18 9 32 32 H 1.08996 * 110.48824 * 98.42393 * 19 18 9 33 33 H 1.09007 * 110.75354 * 279.62386 * 20 19 18 34 34 H 1.09003 * 110.91387 * 156.33007 * 20 19 18 35 35 H 1.08999 * 110.48458 * 203.37826 * 21 20 19 36 36 H 1.09000 * 110.48364 * 80.74336 * 21 20 19 37 37 H 1.09000 * 110.02847 * 238.56883 * 22 18 9 38 38 H 1.09002 * 110.02875 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0475 -1.2270 0.2954 9 7 1.3758 -2.3606 -0.3732 10 6 0.5803 -2.3723 -1.4612 11 8 0.4248 -1.3593 -2.1098 12 6 -0.1151 -3.6445 -1.8723 13 1 0.4404 -4.5642 -1.6894 14 6 -1.6372 -3.6974 -1.7252 15 6 -1.0061 -3.5926 -3.1150 16 6 -1.1141 -4.2775 -4.4788 17 6 -1.1580 -2.7511 -4.3836 18 6 1.5640 -3.5843 0.4098 19 6 1.2671 -3.3099 1.8986 20 6 2.3108 -4.1660 2.6581 21 6 3.5753 -4.0266 1.7747 22 6 3.0317 -4.0400 0.3311 23 1 -0.4851 0.8368 0.0738 24 1 -2.0829 -4.6520 -1.4455 25 1 -2.1358 -2.8118 -1.3312 26 1 -0.2108 -4.7306 -4.8874 27 1 -2.0455 -4.7943 -4.7101 28 1 -2.1182 -2.2637 -4.5524 29 1 -0.2836 -2.1996 -4.7295 30 1 0.9082 -4.3708 0.0363 31 1 1.4028 -2.2525 2.1260 32 1 0.2558 -3.6287 2.1509 33 1 1.9906 -5.2066 2.7130 34 1 2.4905 -3.7656 3.6559 35 1 4.2485 -4.8685 1.9366 36 1 4.0837 -3.0851 1.9822 37 1 3.0880 -5.0480 -0.0799 38 1 3.6037 -3.3509 -0.2902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335526298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:09 Heat of formation + Delta-G solvation = 11.564680 kcal Electronic energy + Delta-G solvation = -19077.733124 eV Core-core repulsion = 16307.524597 eV Total energy + Delta-G solvation = -2770.208527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77485 -38.99787 -37.72200 -35.08799 -33.76610 -32.97157 -29.40196 -28.42815 -27.14752 -24.28191 -23.23901 -21.53047 -21.34408 -21.05365 -19.70088 -18.18940 -17.62060 -16.86477 -16.28414 -16.04746 -15.84621 -15.38723 -15.27416 -14.81412 -14.42862 -14.06113 -13.43807 -13.09693 -12.91680 -12.82160 -12.48940 -12.46385 -12.31494 -12.19683 -12.08444 -11.83810 -11.75314 -11.35952 -11.33139 -11.00021 -10.86363 -10.75214 -10.64702 -9.88076 -8.96749 -8.15674 -5.89799 1.33620 1.42455 1.45179 2.19029 2.36234 2.73319 2.97100 3.28541 3.31668 3.56644 3.90959 3.93710 3.99312 4.05354 4.26052 4.43638 4.56242 4.67710 4.72579 4.75249 4.77372 4.81103 4.83421 4.85859 4.90958 4.97286 5.04363 5.13669 5.17450 5.21301 5.30501 5.31963 5.47158 5.58009 5.60186 5.72601 6.28717 7.11437 7.32324 7.80132 8.48042 8.93735 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.010554 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.271416 B = 2652.496314 C = 3934.481141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.342 4.342 8 H 0.074 0.926 9 N -0.458 5.458 10 C 0.486 3.514 11 O -0.586 6.586 12 C -0.138 4.138 13 H 0.133 0.867 14 C -0.094 4.094 15 C -0.225 4.225 16 C -0.090 4.090 17 C -0.139 4.139 18 C 0.121 3.879 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.129 4.129 23 H 0.255 0.745 24 H 0.135 0.865 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -12.904 0.391 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.091 0.909 9 N -0.179 5.179 10 C 0.275 3.725 11 O -0.468 6.468 12 C -0.159 4.159 13 H 0.150 0.850 14 C -0.131 4.131 15 C -0.226 4.226 16 C -0.126 4.126 17 C -0.176 4.176 18 C 0.017 3.983 19 C -0.162 4.162 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.167 4.167 23 H 0.064 0.936 24 H 0.153 0.847 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.603 -12.263 0.023 12.277 hybrid contribution 0.263 1.674 0.078 1.696 sum 0.866 -10.589 0.100 10.625 Atomic orbital electron populations 1.69939 1.07810 1.27112 1.45677 1.25958 0.95405 1.02219 0.94776 0.85512 0.78240 0.78924 0.78633 1.21059 1.21611 1.18122 1.18919 0.94529 0.85251 1.48295 0.90863 1.43557 1.43699 1.08677 1.21965 1.19965 0.82624 0.88665 0.81221 1.90457 1.64354 1.36510 1.55465 1.22031 0.94420 0.97741 1.01741 0.84956 1.22546 0.92391 1.02943 0.95227 1.21384 1.04958 1.10047 0.86179 1.22842 1.04325 0.93403 0.92072 1.22473 1.01891 0.94831 0.98362 1.22016 0.96771 0.87390 0.92119 1.22543 0.98665 1.00357 0.94655 1.22409 0.94327 1.00023 0.97991 1.22251 0.97602 1.01408 0.93821 1.22473 0.95364 1.00830 0.98053 0.93603 0.84741 0.91669 0.87548 0.85703 0.88749 0.91087 0.89546 0.93249 0.92752 0.89562 0.91306 0.89522 0.93419 0.89852 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.12 11.74 21.66 0.25 -53.87 16 2 C 0.02 1.30 4.38 84.93 0.37 1.67 16 3 Si 0.96 47.23 29.59 68.60 2.03 49.26 16 4 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.34 -19.20 7.21 84.04 0.61 -18.59 16 8 H 0.07 4.01 7.52 -2.91 -0.02 3.99 16 9 N -0.46 -23.30 2.42 -609.37 -1.47 -24.77 16 10 C 0.49 25.82 6.75 87.66 0.59 26.41 16 11 O -0.59 -36.77 14.00 -3.07 -0.04 -36.82 16 12 C -0.14 -5.57 4.94 -11.54 -0.06 -5.63 16 13 H 0.13 4.47 6.78 -2.39 -0.02 4.45 16 14 C -0.09 -3.37 10.24 30.60 0.31 -3.06 16 15 C -0.23 -8.17 5.05 -52.19 -0.26 -8.43 16 16 C -0.09 -2.37 10.53 30.59 0.32 -2.05 16 17 C -0.14 -4.93 10.16 30.59 0.31 -4.62 16 18 C 0.12 4.71 3.15 45.72 0.14 4.85 16 19 C -0.12 -4.63 6.39 31.67 0.20 -4.43 16 20 C -0.11 -3.00 6.91 31.88 0.22 -2.78 16 21 C -0.11 -3.18 6.83 31.67 0.22 -2.97 16 22 C -0.13 -4.24 6.27 31.32 0.20 -4.05 16 23 H 0.25 15.46 8.32 -92.71 -0.77 14.69 16 24 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 25 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 30 H 0.09 3.00 5.61 -2.39 -0.01 2.99 16 31 H 0.05 2.27 6.82 -2.38 -0.02 2.26 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.68 7.32 -2.39 -0.02 1.66 16 Total: -1.00 -74.34 307.95 4.98 -69.36 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.03 Total: 20.50 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.17 Total: -23.67 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.22 Total: -78.64 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.04 Total: -36.82 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -74.34 4.98 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335526298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.927 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds