Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47295 * 269.99932 * 3 2 1 5 5 H 1.48504 * 109.47231 * 30.00011 * 3 2 1 6 6 H 1.48504 * 109.47421 * 149.99888 * 3 2 1 7 7 C 1.38948 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99923 * 199.57129 * 7 2 1 9 9 N 1.37097 * 120.00171 * 19.57792 * 7 2 1 10 10 C 1.34775 * 120.00110 * 49.59565 * 9 7 2 11 11 O 1.21290 * 120.00227 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.99818 * 0.02562 * 10 9 7 13 13 H 1.08992 * 115.56134 * 34.29379 * 12 10 9 14 14 C 1.53002 * 117.49388 * 248.60479 * 12 10 9 15 15 C 1.52995 * 60.03264 * 252.52367 * 14 12 10 16 16 C 1.52991 * 138.59221 * 229.09975 * 15 14 12 17 17 C 1.52992 * 138.59035 * 130.87705 * 15 14 12 18 18 C 1.46503 * 120.00033 * 229.60380 * 9 7 2 19 19 C 1.54269 * 110.03279 * 55.25223 * 18 9 7 20 20 C 1.54883 * 104.19590 * 217.10665 * 19 18 9 21 21 C 1.54893 * 102.74865 * 37.94511 * 20 19 18 22 22 C 1.53875 * 110.02686 * 298.09168 * 18 9 7 23 23 H 0.96990 * 120.00088 * 355.06078 * 1 2 3 24 24 H 1.09006 * 117.49799 * 145.02695 * 14 12 10 25 25 H 1.08998 * 117.50422 * 0.02725 * 14 12 10 26 26 H 1.09005 * 117.49686 * 336.59177 * 16 15 14 27 27 H 1.09004 * 117.50060 * 121.61504 * 16 15 14 28 28 H 1.08999 * 117.50236 * 238.38926 * 17 15 14 29 29 H 1.09011 * 117.49554 * 23.41137 * 17 15 14 30 30 H 1.08995 * 110.01838 * 176.70458 * 18 9 7 31 31 H 1.08998 * 110.48604 * 335.78739 * 19 18 9 32 32 H 1.09003 * 110.47960 * 98.43361 * 19 18 9 33 33 H 1.09006 * 110.76110 * 279.63299 * 20 19 18 34 34 H 1.09003 * 110.75910 * 156.26021 * 20 19 18 35 35 H 1.08996 * 110.48601 * 203.37505 * 21 20 19 36 36 H 1.09001 * 110.48234 * 80.73802 * 21 20 19 37 37 H 1.09008 * 110.03193 * 238.57010 * 22 18 9 38 38 H 1.08997 * 110.03732 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0422 -1.2302 0.3139 9 7 1.3829 -2.3565 -0.3968 10 6 0.6969 -2.3857 -1.5565 11 8 0.1426 -3.4057 -1.9078 12 6 0.6184 -1.1508 -2.4168 13 1 1.5058 -0.5181 -2.4134 14 6 -0.7414 -0.4600 -2.5385 15 6 -0.1759 -1.2480 -3.7217 16 6 0.0542 -1.0577 -5.2222 17 6 -0.6346 -2.3236 -4.7083 18 6 1.4595 -3.5570 0.4393 19 6 0.9609 -3.2411 1.8646 20 6 1.8887 -4.0728 2.7847 21 6 3.2631 -3.9556 2.0801 22 6 2.9233 -4.0112 0.5764 23 1 -0.4850 0.8368 0.0723 24 1 -0.7484 0.6273 -2.6153 25 1 -1.5790 -0.8984 -1.9961 26 1 -0.5639 -0.3220 -5.7368 27 1 1.0753 -1.1548 -5.5911 28 1 -0.0668 -3.2535 -4.7392 29 1 -1.7059 -2.4206 -4.8849 30 1 0.8603 -4.3554 0.0017 31 1 1.0656 -2.1774 2.0784 32 1 -0.0760 -3.5551 1.9843 33 1 1.5625 -5.1121 2.8245 34 1 1.9292 -3.6409 3.7847 35 1 3.9062 -4.7909 2.3571 36 1 3.7396 -3.0073 2.3287 37 1 3.0343 -5.0304 0.2060 38 1 3.5767 -3.3382 0.0212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335526301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = 20.215400 kcal Electronic energy + Delta-G solvation = -19194.261709 eV Core-core repulsion = 16424.428305 eV Total energy + Delta-G solvation = -2769.833404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.07776 -37.44190 -35.88604 -34.04481 -31.77121 -31.03454 -27.94335 -27.15869 -24.69627 -22.82212 -21.79917 -19.99052 -19.61621 -19.24691 -18.12287 -16.42885 -15.72875 -15.17403 -14.72724 -14.36656 -14.30319 -13.99450 -13.53128 -13.06150 -12.70963 -12.55719 -11.67910 -11.44997 -11.15374 -11.03606 -10.99921 -10.83604 -10.66849 -10.53862 -10.48037 -10.36923 -10.34455 -9.99158 -9.63290 -9.36101 -9.23163 -9.06505 -8.66646 -8.13650 -7.24455 -6.34488 -4.07620 3.12569 3.22211 3.23075 4.01208 4.10197 4.33848 4.64124 4.87523 5.05774 5.27253 5.37609 5.40985 5.55580 5.67022 5.98043 6.07940 6.09657 6.23329 6.30936 6.32947 6.34197 6.38434 6.42990 6.50360 6.51875 6.56074 6.60513 6.71303 6.73551 6.74768 6.76997 6.93712 7.10390 7.20345 7.31913 7.51615 8.03937 8.71945 9.00156 9.70723 10.12577 10.70768 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.010111 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.607552 B = 2768.597817 C = 3780.007152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.343 4.343 8 H 0.081 0.919 9 N -0.444 5.444 10 C 0.537 3.463 11 O -0.609 6.609 12 C -0.073 4.073 13 H 0.110 0.890 14 C -0.056 4.056 15 C -0.231 4.231 16 C -0.143 4.143 17 C -0.117 4.117 18 C 0.134 3.866 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.128 4.128 23 H 0.270 0.730 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -1.019 -0.693 2.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.151 4.151 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.098 0.902 9 N -0.162 5.162 10 C 0.328 3.672 11 O -0.495 6.495 12 C -0.093 4.093 13 H 0.127 0.873 14 C -0.094 4.094 15 C -0.232 4.232 16 C -0.180 4.180 17 C -0.154 4.154 18 C 0.030 3.970 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.166 4.166 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.992 -1.402 -0.885 2.592 hybrid contribution 0.431 1.115 0.261 1.223 sum 2.423 -0.287 -0.624 2.519 Atomic orbital electron populations 1.69948 1.06006 1.27766 1.44269 1.25474 0.95066 0.99490 0.95106 0.86342 0.79931 0.82259 0.78667 1.20072 1.20986 1.19478 1.19061 0.95567 0.83775 1.48722 0.90180 1.43334 1.47694 1.09467 1.15751 1.19380 0.79635 0.87201 0.81026 1.90477 1.50796 1.34101 1.74096 1.21516 0.96998 0.98457 0.92378 0.87255 1.22133 0.96642 0.96496 0.94132 1.21735 1.09096 1.05050 0.87271 1.22591 1.00930 1.00449 0.93988 1.22353 0.99464 0.92756 1.00785 1.21538 0.94497 0.89756 0.91242 1.22571 0.97272 1.01914 0.94072 1.22447 0.95974 0.99379 0.98295 1.22260 0.96784 1.00715 0.95654 1.22427 0.98091 1.00086 0.96028 0.91997 0.90084 0.88869 0.89526 0.89523 0.89013 0.89729 0.90510 0.89165 0.93150 0.92549 0.92428 0.92990 0.91719 0.92981 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.13 10.16 55.50 0.56 -20.57 16 2 C 0.06 1.37 3.45 -17.47 -0.06 1.31 16 3 Si 0.90 18.91 29.60 -169.99 -5.03 13.88 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.34 -8.38 6.77 -14.93 -0.10 -8.48 16 8 H 0.08 1.94 7.36 -52.48 -0.39 1.55 16 9 N -0.44 -10.97 2.38 -106.54 -0.25 -11.22 16 10 C 0.54 14.00 6.89 -10.98 -0.08 13.92 16 11 O -0.61 -17.01 15.60 5.55 0.09 -16.93 16 12 C -0.07 -1.72 3.87 -91.73 -0.35 -2.08 16 13 H 0.11 2.62 6.98 -51.93 -0.36 2.25 16 14 C -0.06 -1.23 8.07 -26.73 -0.22 -1.45 16 15 C -0.23 -4.84 5.06 -154.48 -0.78 -5.62 16 16 C -0.14 -2.42 10.53 -26.74 -0.28 -2.70 16 17 C -0.12 -2.19 10.16 -26.74 -0.27 -2.46 16 18 C 0.13 2.97 3.29 -66.81 -0.22 2.75 16 19 C -0.12 -2.45 6.40 -25.07 -0.16 -2.61 16 20 C -0.12 -2.02 6.91 -24.74 -0.17 -2.19 16 21 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 22 C -0.13 -2.42 6.26 -25.62 -0.16 -2.58 16 23 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 24 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 25 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 30 H 0.08 1.82 6.95 -51.93 -0.36 1.46 16 31 H 0.09 2.07 6.93 -51.93 -0.36 1.71 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -27.35 304.89 -9.11 -36.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.05 Total: 8.03 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.03 Total: -14.25 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.31 Total: -31.79 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.09 Total: -16.93 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.35 -9.11 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335526301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.674 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds