Wall clock time and date at job start Mon Mar 30 2020 07:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47295 * 269.99932 * 3 2 1 5 5 H 1.48504 * 109.47231 * 30.00011 * 3 2 1 6 6 H 1.48504 * 109.47421 * 149.99888 * 3 2 1 7 7 C 1.38948 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99923 * 199.57129 * 7 2 1 9 9 N 1.37097 * 120.00171 * 19.57792 * 7 2 1 10 10 C 1.34775 * 120.00110 * 49.59565 * 9 7 2 11 11 O 1.21290 * 120.00227 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.99818 * 0.02562 * 10 9 7 13 13 H 1.08992 * 115.56134 * 34.29379 * 12 10 9 14 14 C 1.53002 * 117.49388 * 248.60479 * 12 10 9 15 15 C 1.52995 * 60.03264 * 252.52367 * 14 12 10 16 16 C 1.52991 * 138.59221 * 229.09975 * 15 14 12 17 17 C 1.52992 * 138.59035 * 130.87705 * 15 14 12 18 18 C 1.46503 * 120.00033 * 229.60380 * 9 7 2 19 19 C 1.54269 * 110.03279 * 55.25223 * 18 9 7 20 20 C 1.54883 * 104.19590 * 217.10665 * 19 18 9 21 21 C 1.54893 * 102.74865 * 37.94511 * 20 19 18 22 22 C 1.53875 * 110.02686 * 298.09168 * 18 9 7 23 23 H 0.96990 * 120.00088 * 355.06078 * 1 2 3 24 24 H 1.09006 * 117.49799 * 145.02695 * 14 12 10 25 25 H 1.08998 * 117.50422 * 0.02725 * 14 12 10 26 26 H 1.09005 * 117.49686 * 336.59177 * 16 15 14 27 27 H 1.09004 * 117.50060 * 121.61504 * 16 15 14 28 28 H 1.08999 * 117.50236 * 238.38926 * 17 15 14 29 29 H 1.09011 * 117.49554 * 23.41137 * 17 15 14 30 30 H 1.08995 * 110.01838 * 176.70458 * 18 9 7 31 31 H 1.08998 * 110.48604 * 335.78739 * 19 18 9 32 32 H 1.09003 * 110.47960 * 98.43361 * 19 18 9 33 33 H 1.09006 * 110.76110 * 279.63299 * 20 19 18 34 34 H 1.09003 * 110.75910 * 156.26021 * 20 19 18 35 35 H 1.08996 * 110.48601 * 203.37505 * 21 20 19 36 36 H 1.09001 * 110.48234 * 80.73802 * 21 20 19 37 37 H 1.09008 * 110.03193 * 238.57010 * 22 18 9 38 38 H 1.08997 * 110.03732 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0422 -1.2302 0.3139 9 7 1.3829 -2.3565 -0.3968 10 6 0.6969 -2.3857 -1.5565 11 8 0.1426 -3.4057 -1.9078 12 6 0.6184 -1.1508 -2.4168 13 1 1.5058 -0.5181 -2.4134 14 6 -0.7414 -0.4600 -2.5385 15 6 -0.1759 -1.2480 -3.7217 16 6 0.0542 -1.0577 -5.2222 17 6 -0.6346 -2.3236 -4.7083 18 6 1.4595 -3.5570 0.4393 19 6 0.9609 -3.2411 1.8646 20 6 1.8887 -4.0728 2.7847 21 6 3.2631 -3.9556 2.0801 22 6 2.9233 -4.0112 0.5764 23 1 -0.4850 0.8368 0.0723 24 1 -0.7484 0.6273 -2.6153 25 1 -1.5790 -0.8984 -1.9961 26 1 -0.5639 -0.3220 -5.7368 27 1 1.0753 -1.1548 -5.5911 28 1 -0.0668 -3.2535 -4.7392 29 1 -1.7059 -2.4206 -4.8849 30 1 0.8603 -4.3554 0.0017 31 1 1.0656 -2.1774 2.0784 32 1 -0.0760 -3.5551 1.9843 33 1 1.5625 -5.1121 2.8245 34 1 1.9292 -3.6409 3.7847 35 1 3.9062 -4.7909 2.3571 36 1 3.7396 -3.0073 2.3287 37 1 3.0343 -5.0304 0.2060 38 1 3.5767 -3.3382 0.0212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335526301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:12 Heat of formation + Delta-G solvation = 7.269936 kcal Electronic energy + Delta-G solvation = -19194.823066 eV Core-core repulsion = 16424.428305 eV Total energy + Delta-G solvation = -2770.394761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91551 -39.05606 -37.60820 -35.91987 -33.46888 -32.83884 -29.48223 -28.80988 -26.60769 -24.61507 -23.21836 -21.45027 -21.34785 -21.04577 -19.78707 -18.33275 -17.46624 -17.07592 -16.30714 -15.99861 -15.79133 -15.60952 -15.26685 -14.93813 -14.40110 -14.14382 -13.49143 -13.23378 -12.93172 -12.69155 -12.57987 -12.38323 -12.32095 -12.21953 -12.05449 -11.89594 -11.83469 -11.41672 -11.34686 -11.05928 -10.87299 -10.71452 -10.47129 -10.07963 -9.16017 -8.21446 -6.01538 1.44900 1.50307 1.57259 2.10139 2.33916 2.71719 2.90817 3.14598 3.33270 3.64128 3.85733 3.91157 4.09162 4.19978 4.32187 4.57023 4.64940 4.70642 4.75751 4.77641 4.78027 4.84149 4.87004 4.90975 4.97242 4.97635 5.06143 5.06245 5.15416 5.23418 5.30502 5.35365 5.42118 5.50305 5.59220 5.65356 6.15430 6.78426 7.10018 7.75327 8.19189 8.84126 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.010111 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.607552 B = 2768.597817 C = 3780.007152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.446 5.446 10 C 0.516 3.484 11 O -0.643 6.643 12 C -0.092 4.092 13 H 0.102 0.898 14 C -0.048 4.048 15 C -0.253 4.253 16 C -0.104 4.104 17 C -0.123 4.123 18 C 0.120 3.880 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.108 4.108 22 C -0.122 4.122 23 H 0.272 0.728 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -0.365 -0.847 3.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.099 0.901 9 N -0.164 5.164 10 C 0.307 3.693 11 O -0.532 6.532 12 C -0.112 4.112 13 H 0.120 0.880 14 C -0.086 4.086 15 C -0.254 4.254 16 C -0.141 4.141 17 C -0.159 4.159 18 C 0.016 3.984 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.160 4.160 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.168 -0.750 -1.017 3.411 hybrid contribution 0.030 0.860 0.311 0.915 sum 3.198 0.110 -0.706 3.277 Atomic orbital electron populations 1.70051 1.07292 1.28533 1.44394 1.26070 0.95570 1.01875 0.94219 0.85428 0.78877 0.78484 0.78674 1.19670 1.20940 1.18876 1.19202 0.95708 0.84167 1.49329 0.90137 1.43550 1.46889 1.10315 1.15607 1.19946 0.79895 0.87759 0.81687 1.90423 1.52491 1.35335 1.74993 1.21344 0.97344 0.97894 0.94652 0.88042 1.21909 0.94699 0.97030 0.94915 1.21950 1.07686 1.07122 0.88602 1.22795 1.02043 0.99116 0.90115 1.22469 1.00565 0.92834 1.00065 1.21786 0.96596 0.88409 0.91598 1.22465 0.97774 1.00961 0.94222 1.22416 0.94632 0.99680 0.98144 1.22232 0.97150 1.02023 0.93109 1.22359 0.95155 1.00224 0.98297 0.91854 0.88670 0.91515 0.86343 0.88045 0.90299 0.88201 0.93068 0.91876 0.94306 0.90685 0.90407 0.89576 0.92045 0.91634 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.22 10.16 21.66 0.22 -44.00 16 2 C 0.03 1.43 3.45 84.93 0.29 1.72 16 3 Si 0.96 38.46 29.60 68.60 2.03 40.49 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.36 -17.74 6.77 84.04 0.57 -17.17 16 8 H 0.08 3.94 7.36 -2.91 -0.02 3.91 16 9 N -0.45 -22.86 2.38 -609.37 -1.45 -24.30 16 10 C 0.52 27.98 6.89 87.66 0.60 28.59 16 11 O -0.64 -37.68 15.60 -3.06 -0.05 -37.73 16 12 C -0.09 -4.42 3.87 -11.51 -0.04 -4.47 16 13 H 0.10 4.94 6.98 -2.39 -0.02 4.93 16 14 C -0.05 -2.11 8.07 30.59 0.25 -1.87 16 15 C -0.25 -10.49 5.06 -52.16 -0.26 -10.76 16 16 C -0.10 -3.23 10.53 30.59 0.32 -2.90 16 17 C -0.12 -4.47 10.16 30.59 0.31 -4.16 16 18 C 0.12 5.47 3.29 45.72 0.15 5.62 16 19 C -0.12 -4.81 6.40 31.67 0.20 -4.60 16 20 C -0.11 -3.41 6.91 31.88 0.22 -3.19 16 21 C -0.11 -3.25 6.83 31.67 0.22 -3.04 16 22 C -0.12 -4.56 6.26 31.32 0.20 -4.36 16 23 H 0.27 13.12 8.31 -92.72 -0.77 12.35 16 24 H 0.10 3.85 8.14 -2.38 -0.02 3.83 16 25 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 26 H 0.12 2.97 8.14 -2.38 -0.02 2.96 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 30 H 0.05 2.56 6.95 -2.39 -0.02 2.54 16 31 H 0.06 2.96 6.93 -2.39 -0.02 2.94 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.05 2.21 7.11 -2.39 -0.02 2.20 16 Total: -1.00 -61.07 304.89 4.81 -56.27 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.03 Total: 29.86 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.02 Total: -20.58 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.23 Total: -68.30 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.05 Total: -37.73 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -61.07 4.81 -56.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335526301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.535 kcal (2) G-P(sol) polarization free energy of solvation -61.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds