Wall clock time and date at job start Mon Mar 30 2020 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86794 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47382 * 240.00336 * 3 2 1 5 5 H 1.48508 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47225 * 119.99789 * 3 2 1 7 7 C 1.40049 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00231 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00526 * 5.21961 * 9 7 2 11 11 N 1.34783 * 120.00111 * 185.21989 * 9 7 2 12 12 C 1.46924 * 120.64369 * 354.83040 * 11 9 7 13 13 C 1.53192 * 108.80064 * 126.27021 * 12 11 9 14 14 C 1.53066 * 109.31277 * 54.69718 * 13 12 11 15 15 C 1.52866 * 109.57888 * 298.86382 * 14 13 12 16 16 C 1.52874 * 109.79884 * 181.58562 * 15 14 13 17 17 C 1.50101 * 110.12646 * 169.15699 * 16 15 14 18 18 C 1.29442 * 124.03136 * 343.02323 * 17 16 15 19 19 C 1.50065 * 124.14411 * 0.41790 * 18 17 16 20 20 C 1.53053 * 110.15633 * 342.92596 * 19 18 17 21 21 C 1.46950 * 120.64938 * 174.80744 * 11 9 7 22 22 H 0.96996 * 120.00177 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.58208 * 246.06239 * 12 11 9 24 24 H 1.08997 * 109.58486 * 6.33313 * 12 11 9 25 25 H 1.08998 * 109.49439 * 174.64837 * 13 12 11 26 26 H 1.08996 * 109.49298 * 294.70843 * 13 12 11 27 27 H 1.09003 * 109.44829 * 178.83692 * 14 13 12 28 28 H 1.08997 * 109.45595 * 58.90205 * 14 13 12 29 29 H 1.08997 * 109.36365 * 289.36220 * 16 15 14 30 30 H 1.09004 * 109.36267 * 48.95828 * 16 15 14 31 31 H 1.08004 * 117.98886 * 162.99740 * 17 16 15 32 32 H 1.08003 * 117.93183 * 180.44166 * 18 17 16 33 33 H 1.08997 * 109.35243 * 103.13590 * 19 18 17 34 34 H 1.08997 * 109.35586 * 222.71545 * 19 18 17 35 35 H 1.08999 * 109.66080 * 289.55466 * 20 19 18 36 36 H 1.09001 * 109.63570 * 168.91680 * 20 19 18 37 37 H 1.08998 * 109.58288 * 113.68786 * 21 11 9 38 38 H 1.09005 * 109.69978 * 353.33490 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0620 -2.4828 -0.0958 11 7 1.9447 -3.6453 0.1073 12 6 3.4138 -3.6670 0.1107 13 6 3.8935 -4.4225 1.3540 14 6 3.2458 -5.8091 1.3850 15 6 1.7260 -5.6629 1.4605 16 6 1.0759 -7.0447 1.5315 17 6 -0.3806 -6.9134 1.8697 18 6 -0.9144 -5.8465 2.3718 19 6 -0.1551 -4.5888 2.6780 20 6 1.3474 -4.8771 2.7205 21 6 1.2197 -4.9183 0.2229 22 1 -0.4850 0.8400 -0.0004 23 1 3.7738 -4.1724 -0.7855 24 1 3.7942 -2.6458 0.1318 25 1 4.9778 -4.5282 1.3196 26 1 3.6102 -3.8679 2.2485 27 1 3.6016 -6.3564 2.2579 28 1 3.5136 -6.3552 0.4805 29 1 1.1796 -7.5429 0.5677 30 1 1.5728 -7.6389 2.2985 31 1 -1.0229 -7.7612 1.6822 32 1 -1.9732 -5.8624 2.5843 33 1 -0.3589 -3.8469 1.9059 34 1 -0.4758 -4.1993 3.6441 35 1 1.5825 -5.4684 3.6055 36 1 1.9000 -3.9379 2.7464 37 1 1.3990 -5.5229 -0.6661 38 1 0.1518 -4.7250 0.3242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335741071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:56 Heat of formation + Delta-G solvation = -32.039940 kcal Electronic energy + Delta-G solvation = -19487.381346 eV Core-core repulsion = 16715.281980 eV Total energy + Delta-G solvation = -2772.099365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96934 -36.94482 -35.09170 -32.56049 -31.79222 -30.42136 -30.32258 -27.02116 -25.43082 -24.13489 -22.75159 -21.73547 -19.87830 -18.45667 -16.76627 -16.50173 -15.75254 -15.60288 -14.43088 -14.39575 -13.97777 -13.84578 -13.35960 -12.98783 -12.88803 -12.49657 -12.16132 -11.96888 -11.82326 -11.62177 -11.44471 -11.14063 -10.94958 -10.73927 -10.63884 -10.49012 -10.21769 -9.91601 -9.89326 -9.54986 -9.45753 -8.82702 -8.56384 -7.52239 -7.10548 -6.17059 -4.61317 2.68096 3.15826 3.21191 3.22415 4.10561 4.57988 4.63521 4.98809 5.05332 5.17378 5.47272 5.52573 5.62547 5.69037 5.79683 5.82672 5.89367 5.95721 6.01226 6.05903 6.14212 6.22504 6.27096 6.37432 6.40715 6.51829 6.60000 6.63091 6.72049 6.73138 6.89176 7.01143 7.10480 7.35538 7.48148 7.70690 8.18791 8.41769 9.04951 9.50579 10.61172 10.80391 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.007799 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.175245 B = 3589.458533 C = 4126.183124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.562 3.438 10 O -0.577 6.577 11 N -0.639 5.639 12 C 0.120 3.880 13 C -0.137 4.137 14 C -0.102 4.102 15 C -0.072 4.072 16 C -0.073 4.073 17 C -0.172 4.172 18 C -0.136 4.136 19 C -0.105 4.105 20 C -0.099 4.099 21 C 0.130 3.870 22 H 0.268 0.732 23 H 0.038 0.962 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 -10.011 4.343 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.089 0.911 9 C 0.368 3.632 10 O -0.460 6.460 11 N -0.376 5.376 12 C -0.004 4.004 13 C -0.176 4.176 14 C -0.140 4.140 15 C -0.073 4.073 16 C -0.111 4.111 17 C -0.190 4.190 18 C -0.154 4.154 19 C -0.142 4.142 20 C -0.136 4.136 21 C 0.006 3.994 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.362 -9.881 4.276 11.617 hybrid contribution 0.486 0.658 0.015 0.818 sum 4.848 -9.224 4.291 11.269 Atomic orbital electron populations 1.70000 1.06976 1.27266 1.35435 1.25700 0.94580 1.00150 0.92646 0.86502 0.79900 0.81352 0.79413 1.19312 1.20610 1.19328 1.20955 0.93508 0.89398 1.54395 0.91083 1.18167 0.86865 0.82129 0.76024 1.90579 1.14358 1.86155 1.54897 1.48114 1.04546 1.05864 1.79081 1.21410 0.82786 1.01219 0.95003 1.22010 0.98858 0.96325 1.00383 1.21466 0.94566 0.97121 1.00827 1.20871 0.94729 0.94603 0.97083 1.20391 0.93113 0.96653 1.00920 1.21904 0.96631 0.98247 1.02229 1.22109 0.99211 0.95173 0.98894 1.20649 0.94540 0.96519 1.02469 1.21542 0.95930 1.00267 0.95863 1.21231 0.98915 0.85620 0.93642 0.92140 0.94392 0.89060 0.92268 0.91326 0.92803 0.92479 0.91581 0.91501 0.88651 0.88676 0.87924 0.92084 0.93218 0.90796 0.94759 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.84 55.55 0.66 -22.07 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.90 19.97 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.09 8.88 -35.63 -0.32 -15.41 16 8 H 0.07 1.80 5.64 -52.49 -0.30 1.50 16 9 C 0.56 15.68 7.54 -12.99 -0.10 15.58 16 10 O -0.58 -18.18 13.46 5.20 0.07 -18.11 16 11 N -0.64 -14.38 2.57 -174.50 -0.45 -14.83 16 12 C 0.12 2.25 6.34 -3.71 -0.02 2.22 16 13 C -0.14 -2.11 5.76 -26.60 -0.15 -2.26 16 14 C -0.10 -1.46 4.70 -26.77 -0.13 -1.59 16 15 C -0.07 -1.16 0.52 -154.49 -0.08 -1.24 16 16 C -0.07 -1.02 4.89 -28.24 -0.14 -1.16 16 17 C -0.17 -2.51 9.47 -35.88 -0.34 -2.85 16 18 C -0.14 -2.19 9.18 -35.90 -0.33 -2.52 16 19 C -0.11 -1.93 5.48 -28.16 -0.15 -2.08 16 20 C -0.10 -1.69 4.54 -26.57 -0.12 -1.81 16 21 C 0.13 2.61 4.52 -3.77 -0.02 2.59 16 22 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 1.79 5.30 -51.93 -0.28 1.52 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.13 6.22 -51.93 -0.32 0.81 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 30 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.10 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.10 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.10 2.36 5.67 -51.93 -0.29 2.07 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.07 1.42 5.89 -51.93 -0.31 1.11 16 37 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.09 2.06 4.47 -51.93 -0.23 1.83 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -31.67 286.83 -7.92 -39.59 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.51 Total: 4.32 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.99 Total: -8.17 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.21 Total: -36.90 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.07 Total: -18.11 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.67 -7.92 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335741071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.549 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds