Wall clock time and date at job start Mon Mar 30 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86794 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47382 * 240.00336 * 3 2 1 5 5 H 1.48508 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47225 * 119.99789 * 3 2 1 7 7 C 1.40049 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00231 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00526 * 5.21961 * 9 7 2 11 11 N 1.34783 * 120.00111 * 185.21989 * 9 7 2 12 12 C 1.46924 * 120.64369 * 354.83040 * 11 9 7 13 13 C 1.53192 * 108.80064 * 126.27021 * 12 11 9 14 14 C 1.53066 * 109.31277 * 54.69718 * 13 12 11 15 15 C 1.52866 * 109.57888 * 298.86382 * 14 13 12 16 16 C 1.52874 * 109.79884 * 181.58562 * 15 14 13 17 17 C 1.50101 * 110.12646 * 169.15699 * 16 15 14 18 18 C 1.29442 * 124.03136 * 343.02323 * 17 16 15 19 19 C 1.50065 * 124.14411 * 0.41790 * 18 17 16 20 20 C 1.53053 * 110.15633 * 342.92596 * 19 18 17 21 21 C 1.46950 * 120.64938 * 174.80744 * 11 9 7 22 22 H 0.96996 * 120.00177 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.58208 * 246.06239 * 12 11 9 24 24 H 1.08997 * 109.58486 * 6.33313 * 12 11 9 25 25 H 1.08998 * 109.49439 * 174.64837 * 13 12 11 26 26 H 1.08996 * 109.49298 * 294.70843 * 13 12 11 27 27 H 1.09003 * 109.44829 * 178.83692 * 14 13 12 28 28 H 1.08997 * 109.45595 * 58.90205 * 14 13 12 29 29 H 1.08997 * 109.36365 * 289.36220 * 16 15 14 30 30 H 1.09004 * 109.36267 * 48.95828 * 16 15 14 31 31 H 1.08004 * 117.98886 * 162.99740 * 17 16 15 32 32 H 1.08003 * 117.93183 * 180.44166 * 18 17 16 33 33 H 1.08997 * 109.35243 * 103.13590 * 19 18 17 34 34 H 1.08997 * 109.35586 * 222.71545 * 19 18 17 35 35 H 1.08999 * 109.66080 * 289.55466 * 20 19 18 36 36 H 1.09001 * 109.63570 * 168.91680 * 20 19 18 37 37 H 1.08998 * 109.58288 * 113.68786 * 21 11 9 38 38 H 1.09005 * 109.69978 * 353.33490 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0620 -2.4828 -0.0958 11 7 1.9447 -3.6453 0.1073 12 6 3.4138 -3.6670 0.1107 13 6 3.8935 -4.4225 1.3540 14 6 3.2458 -5.8091 1.3850 15 6 1.7260 -5.6629 1.4605 16 6 1.0759 -7.0447 1.5315 17 6 -0.3806 -6.9134 1.8697 18 6 -0.9144 -5.8465 2.3718 19 6 -0.1551 -4.5888 2.6780 20 6 1.3474 -4.8771 2.7205 21 6 1.2197 -4.9183 0.2229 22 1 -0.4850 0.8400 -0.0004 23 1 3.7738 -4.1724 -0.7855 24 1 3.7942 -2.6458 0.1318 25 1 4.9778 -4.5282 1.3196 26 1 3.6102 -3.8679 2.2485 27 1 3.6016 -6.3564 2.2579 28 1 3.5136 -6.3552 0.4805 29 1 1.1796 -7.5429 0.5677 30 1 1.5728 -7.6389 2.2985 31 1 -1.0229 -7.7612 1.6822 32 1 -1.9732 -5.8624 2.5843 33 1 -0.3589 -3.8469 1.9059 34 1 -0.4758 -4.1993 3.6441 35 1 1.5825 -5.4684 3.6055 36 1 1.9000 -3.9379 2.7464 37 1 1.3990 -5.5229 -0.6661 38 1 0.1518 -4.7250 0.3242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335741071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:55 Heat of formation + Delta-G solvation = -51.414026 kcal Electronic energy + Delta-G solvation = -19488.221469 eV Core-core repulsion = 16715.281980 eV Total energy + Delta-G solvation = -2772.939489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40529 -38.78461 -36.69085 -34.65262 -33.40371 -31.83422 -31.63801 -28.92187 -26.94214 -25.80597 -24.07574 -23.11646 -21.67572 -19.92859 -18.33627 -18.09539 -17.74196 -16.99017 -16.24865 -16.00851 -15.41500 -15.23987 -14.84553 -14.54932 -14.32044 -13.97017 -13.75385 -13.50183 -13.32327 -13.10354 -12.94422 -12.80689 -12.67909 -12.54737 -12.10601 -11.99281 -11.78598 -11.52277 -11.32388 -10.90173 -10.89265 -10.77671 -9.81221 -9.67612 -8.93190 -8.25236 -6.78929 1.38434 1.41949 1.46453 1.52713 2.24429 2.51231 2.95328 3.62529 3.71084 3.81995 3.92578 4.19708 4.29465 4.34792 4.39582 4.50906 4.55092 4.59962 4.71478 4.82413 4.85383 4.90956 4.98688 5.08124 5.08893 5.12138 5.22852 5.23352 5.31167 5.36904 5.43716 5.50336 5.66075 5.84230 5.87311 6.11675 6.20221 6.51709 6.91844 7.52867 8.54215 8.73044 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.007799 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.175245 B = 3589.458533 C = 4126.183124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.546 3.454 10 O -0.628 6.628 11 N -0.639 5.639 12 C 0.113 3.887 13 C -0.130 4.130 14 C -0.097 4.097 15 C -0.066 4.066 16 C -0.073 4.073 17 C -0.154 4.154 18 C -0.166 4.166 19 C -0.101 4.101 20 C -0.094 4.094 21 C 0.127 3.873 22 H 0.271 0.729 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 -11.920 4.894 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.608 4.608 8 H 0.108 0.892 9 C 0.352 3.648 10 O -0.515 6.515 11 N -0.375 5.375 12 C -0.011 4.011 13 C -0.168 4.168 14 C -0.135 4.135 15 C -0.067 4.067 16 C -0.110 4.110 17 C -0.172 4.172 18 C -0.184 4.184 19 C -0.139 4.139 20 C -0.131 4.131 21 C 0.004 3.996 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.255 -11.842 4.831 14.704 hybrid contribution -0.413 1.171 -0.196 1.257 sum 6.842 -10.671 4.635 13.497 Atomic orbital electron populations 1.70193 1.09423 1.28643 1.37017 1.26929 0.95448 1.04744 0.91361 0.85180 0.78319 0.75230 0.80269 1.17880 1.20144 1.17794 1.21483 0.94657 0.90077 1.54630 0.89176 1.18512 0.86498 0.84041 0.75754 1.90531 1.16551 1.87399 1.57062 1.47970 1.06377 1.05390 1.77783 1.21642 0.80180 1.01399 0.97830 1.21952 1.00977 0.96422 0.97496 1.21477 0.92251 0.96631 1.03095 1.20837 0.96725 0.95176 0.93936 1.20488 0.92316 0.95256 1.02956 1.22262 0.97691 0.98093 0.99126 1.22033 0.99539 0.94948 1.01840 1.20485 0.96414 0.96561 1.00391 1.21497 0.94255 0.99614 0.97762 1.21350 0.96986 0.84984 0.96283 0.91884 0.92561 0.90605 0.88753 0.92922 0.89694 0.90810 0.89835 0.88274 0.86006 0.88194 0.93744 0.92264 0.90492 0.93663 0.93886 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.29 11.84 21.84 0.26 -51.04 16 2 C 0.03 1.69 5.50 85.30 0.47 2.16 16 3 Si 0.99 41.64 29.56 68.60 2.03 43.67 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.57 -32.73 8.88 24.83 0.22 -32.51 16 8 H 0.09 4.62 5.64 -2.91 -0.02 4.61 16 9 C 0.55 32.15 7.54 86.36 0.65 32.80 16 10 O -0.63 -42.60 13.46 -4.31 -0.06 -42.66 16 11 N -0.64 -29.55 2.57 -824.21 -2.12 -31.67 16 12 C 0.11 4.09 6.34 86.36 0.55 4.64 16 13 C -0.13 -3.64 5.76 30.68 0.18 -3.46 16 14 C -0.10 -2.36 4.70 30.57 0.14 -2.22 16 15 C -0.07 -1.99 0.52 -52.17 -0.03 -2.01 16 16 C -0.07 -1.75 4.89 29.62 0.14 -1.60 16 17 C -0.15 -4.13 9.47 27.05 0.26 -3.87 16 18 C -0.17 -5.37 9.18 27.04 0.25 -5.12 16 19 C -0.10 -3.93 5.48 29.67 0.16 -3.77 16 20 C -0.09 -3.18 4.54 30.70 0.14 -3.04 16 21 C 0.13 5.17 4.52 86.31 0.39 5.56 16 22 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 23 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.08 2.96 5.30 -2.39 -0.01 2.94 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.66 6.22 -2.39 -0.01 1.64 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 30 H 0.10 1.86 8.11 -2.38 -0.02 1.84 16 31 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.10 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.04 2.25 5.67 -2.39 -0.01 2.24 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 36 H 0.04 1.77 5.89 -2.39 -0.01 1.76 16 37 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 38 H 0.05 2.61 4.47 -2.38 -0.01 2.60 16 Total: -1.00 -75.40 286.83 4.68 -70.72 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.05 Total: 23.42 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 3.52 Total: -12.44 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.86 Total: -82.70 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.06 Total: -42.66 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.40 4.68 -70.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335741071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.301 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds