Wall clock time and date at job start Mon Mar 30 2020 07:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48501 * 109.46761 * 264.68528 * 3 2 1 5 5 H 1.48499 * 109.47253 * 24.68467 * 3 2 1 6 6 H 1.48501 * 109.47184 * 144.68434 * 3 2 1 7 7 C 1.40049 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 351.03102 * 7 2 1 9 9 C 1.46377 * 119.99854 * 171.03052 * 7 2 1 10 10 O 1.21687 * 120.00013 * 347.59411 * 9 7 2 11 11 N 1.34771 * 119.99959 * 167.59862 * 9 7 2 12 12 C 1.46928 * 120.64588 * 354.76112 * 11 9 7 13 13 C 1.53196 * 108.77403 * 126.25780 * 12 11 9 14 14 C 1.53059 * 109.30838 * 54.74613 * 13 12 11 15 15 C 1.52882 * 109.59886 * 298.83259 * 14 13 12 16 16 C 1.52869 * 109.80035 * 300.45496 * 15 14 13 17 17 C 1.50075 * 110.20376 * 289.16106 * 16 15 14 18 18 C 1.29447 * 124.06794 * 343.14580 * 17 16 15 19 19 C 1.50055 * 124.10342 * 0.52058 * 18 17 16 20 20 C 1.52940 * 109.60236 * 181.17474 * 15 14 13 21 21 C 1.46942 * 120.64220 * 174.74472 * 11 9 7 22 22 H 0.96996 * 119.99790 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.58856 * 246.04973 * 12 11 9 24 24 H 1.08999 * 109.58775 * 6.47187 * 12 11 9 25 25 H 1.09000 * 109.50279 * 174.69696 * 13 12 11 26 26 H 1.08997 * 109.49438 * 294.76562 * 13 12 11 27 27 H 1.09005 * 109.45121 * 178.79465 * 14 13 12 28 28 H 1.08999 * 109.45094 * 58.87337 * 14 13 12 29 29 H 1.08998 * 109.34730 * 168.93009 * 16 15 14 30 30 H 1.09004 * 109.22548 * 49.31142 * 16 15 14 31 31 H 1.07996 * 117.97028 * 163.13465 * 17 16 15 32 32 H 1.08004 * 117.94711 * 180.53146 * 18 17 16 33 33 H 1.09002 * 109.36078 * 102.95144 * 19 18 17 34 34 H 1.09002 * 109.35676 * 222.66841 * 19 18 17 35 35 H 1.08997 * 109.46204 * 293.12567 * 20 15 14 36 36 H 1.08994 * 109.63705 * 172.63715 * 20 15 14 37 37 H 1.09009 * 109.57899 * 113.64662 * 21 11 9 38 38 H 1.08993 * 109.69200 * 353.31428 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6005 1.9816 -1.3941 5 1 1.3866 2.6825 0.5847 6 1 3.4776 1.4753 0.8094 7 6 2.0070 -1.2129 0.0005 8 1 1.4769 -2.1424 0.1468 9 6 3.4574 -1.2207 -0.1971 10 8 4.0242 -0.2156 -0.5836 11 7 4.1649 -2.3410 0.0489 12 6 3.5146 -3.5265 0.6239 13 6 3.8027 -4.7322 -0.2762 14 6 5.3153 -4.8754 -0.4616 15 6 5.8701 -3.6212 -1.1371 16 6 5.2024 -3.4278 -2.4985 17 6 5.6790 -4.4742 -3.4629 18 6 6.7396 -5.1948 -3.2852 19 6 7.6348 -5.0928 -2.0853 20 6 7.3768 -3.7763 -1.3488 21 6 5.6017 -2.4008 -0.2531 22 1 -0.4850 0.8400 -0.0004 23 1 3.9108 -3.7126 1.6221 24 1 2.4386 -3.3616 0.6805 25 1 3.4059 -5.6354 0.1873 26 1 3.3292 -4.5831 -1.2466 27 1 5.5239 -5.7454 -1.0842 28 1 5.7896 -5.0037 0.5114 29 1 5.4511 -2.4397 -2.8856 30 1 4.1215 -3.5087 -2.3829 31 1 5.1013 -4.6363 -4.3608 32 1 6.9964 -5.9144 -4.0486 33 1 7.4353 -5.9277 -1.4135 34 1 8.6757 -5.1287 -2.4069 35 1 7.8796 -3.7930 -0.3819 36 1 7.7506 -2.9439 -1.9449 37 1 6.1666 -2.4907 0.6748 38 1 5.9045 -1.4953 -0.7788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335741072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:00 Heat of formation + Delta-G solvation = -42.341255 kcal Electronic energy + Delta-G solvation = -19258.430346 eV Core-core repulsion = 16485.884282 eV Total energy + Delta-G solvation = -2772.546064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17575 -37.63819 -35.27265 -32.82574 -31.78969 -31.21685 -30.53668 -27.16011 -25.76328 -24.37333 -23.01830 -21.68291 -20.16249 -18.74221 -16.84066 -16.58669 -16.09029 -15.80343 -14.95158 -14.50282 -14.06042 -13.96646 -13.71809 -13.43408 -12.99779 -12.48920 -12.36520 -12.23230 -12.12529 -11.94740 -11.71031 -11.37894 -11.18739 -11.05233 -10.61909 -10.57815 -10.27957 -10.01186 -9.90678 -9.77911 -9.30871 -9.00276 -8.81236 -7.84864 -7.45201 -6.59916 -4.81001 2.44258 3.47652 3.51481 3.75856 4.23431 4.25604 4.59460 4.81007 4.82459 5.00190 5.25137 5.35593 5.43845 5.48168 5.51827 5.52843 5.61821 5.77948 5.88251 5.93050 6.00506 6.08522 6.13826 6.15836 6.19583 6.30126 6.36536 6.44050 6.47696 6.55679 6.64952 6.77949 6.86423 7.13003 7.14167 7.69205 7.92132 8.34705 8.75543 9.18714 10.08539 10.40905 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.006854 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.474267 B = 4084.238699 C = 4286.841836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.101 3.899 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.323 1.323 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.555 3.445 10 O -0.618 6.618 11 N -0.629 5.629 12 C 0.119 3.881 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.069 4.069 16 C -0.083 4.083 17 C -0.138 4.138 18 C -0.171 4.171 19 C -0.085 4.085 20 C -0.108 4.108 21 C 0.130 3.870 22 H 0.281 0.719 23 H 0.045 0.955 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.845 -11.127 -2.082 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.116 4.116 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.255 1.255 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.108 0.892 9 C 0.364 3.636 10 O -0.510 6.510 11 N -0.362 5.362 12 C -0.005 4.005 13 C -0.176 4.176 14 C -0.141 4.141 15 C -0.070 4.070 16 C -0.119 4.119 17 C -0.156 4.156 18 C -0.190 4.190 19 C -0.122 4.122 20 C -0.146 4.146 21 C 0.006 3.994 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.924 -10.588 -2.273 15.382 hybrid contribution 0.212 0.439 -0.130 0.505 sum 11.136 -10.148 -2.403 15.257 Atomic orbital electron populations 1.69566 1.07944 1.29934 1.38504 1.25768 0.94717 1.02067 0.89086 0.85211 0.77675 0.77384 0.79699 1.20556 1.25511 1.19024 1.20792 0.89088 0.95679 1.51313 0.89174 1.18301 0.88136 0.80436 0.76712 1.90183 1.72337 1.32953 1.55573 1.47621 1.07307 1.14095 1.67159 1.21507 1.00001 0.84526 0.94444 1.22017 0.96090 0.98314 1.01214 1.21533 0.95838 0.96980 0.99754 1.20788 0.94459 0.96325 0.95434 1.20528 1.01340 0.97395 0.92670 1.22166 0.96863 0.97328 0.99237 1.21923 0.97256 1.00886 0.98893 1.20411 0.98213 0.98177 0.95436 1.21534 0.95590 0.97416 1.00084 1.21258 0.83648 0.97357 0.97137 0.90874 0.93684 0.88485 0.91934 0.91322 0.91963 0.92499 0.90854 0.89953 0.88474 0.88679 0.91038 0.91742 0.91831 0.91765 0.93615 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.61 13.92 55.55 0.77 -22.84 16 2 C 0.10 2.90 5.52 -17.36 -0.10 2.80 16 3 Si 0.97 25.79 25.86 -169.99 -4.40 21.40 16 4 H -0.28 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 6 H -0.26 -7.41 6.63 56.52 0.37 -7.04 16 7 C -0.53 -14.95 9.31 -35.63 -0.33 -15.28 16 8 H 0.09 2.50 6.04 -52.49 -0.32 2.19 16 9 C 0.55 14.71 7.33 -12.99 -0.10 14.62 16 10 O -0.62 -17.92 11.75 5.20 0.06 -17.86 16 11 N -0.63 -13.46 2.66 -174.49 -0.46 -13.93 16 12 C 0.12 2.16 6.35 -3.71 -0.02 2.13 16 13 C -0.14 -2.07 5.78 -26.60 -0.15 -2.22 16 14 C -0.10 -1.41 4.08 -26.76 -0.11 -1.52 16 15 C -0.07 -1.02 0.50 -154.64 -0.08 -1.10 16 16 C -0.08 -1.32 4.56 -28.25 -0.13 -1.45 16 17 C -0.14 -1.85 9.43 -35.90 -0.34 -2.19 16 18 C -0.17 -2.03 9.17 -35.91 -0.33 -2.36 16 19 C -0.09 -0.93 5.49 -28.18 -0.15 -1.09 16 20 C -0.11 -1.35 4.89 -26.75 -0.13 -1.48 16 21 C 0.13 2.39 5.08 -3.77 -0.02 2.37 16 22 H 0.28 7.39 8.29 -40.82 -0.34 7.05 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.10 1.93 5.36 -51.93 -0.28 1.65 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.12 6.18 -51.93 -0.32 0.80 16 27 H 0.06 0.79 5.71 -51.93 -0.30 0.49 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.08 1.48 5.83 -51.93 -0.30 1.17 16 31 H 0.10 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.07 0.74 6.92 -51.93 -0.36 0.38 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 37 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.08 1.72 6.99 -51.93 -0.36 1.35 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -30.82 284.98 -7.34 -38.16 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.62 Total: -2.48 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.99 Total: -6.75 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.31 Total: -36.77 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.06 Total: -17.86 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.40 Total: 21.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.82 -7.34 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335741072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.180 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds