Wall clock time and date at job start Mon Mar 30 2020 07:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48501 * 109.46761 * 264.68528 * 3 2 1 5 5 H 1.48499 * 109.47253 * 24.68467 * 3 2 1 6 6 H 1.48501 * 109.47184 * 144.68434 * 3 2 1 7 7 C 1.40049 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 351.03102 * 7 2 1 9 9 C 1.46377 * 119.99854 * 171.03052 * 7 2 1 10 10 O 1.21687 * 120.00013 * 347.59411 * 9 7 2 11 11 N 1.34771 * 119.99959 * 167.59862 * 9 7 2 12 12 C 1.46928 * 120.64588 * 354.76112 * 11 9 7 13 13 C 1.53196 * 108.77403 * 126.25780 * 12 11 9 14 14 C 1.53059 * 109.30838 * 54.74613 * 13 12 11 15 15 C 1.52882 * 109.59886 * 298.83259 * 14 13 12 16 16 C 1.52869 * 109.80035 * 300.45496 * 15 14 13 17 17 C 1.50075 * 110.20376 * 289.16106 * 16 15 14 18 18 C 1.29447 * 124.06794 * 343.14580 * 17 16 15 19 19 C 1.50055 * 124.10342 * 0.52058 * 18 17 16 20 20 C 1.52940 * 109.60236 * 181.17474 * 15 14 13 21 21 C 1.46942 * 120.64220 * 174.74472 * 11 9 7 22 22 H 0.96996 * 119.99790 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.58856 * 246.04973 * 12 11 9 24 24 H 1.08999 * 109.58775 * 6.47187 * 12 11 9 25 25 H 1.09000 * 109.50279 * 174.69696 * 13 12 11 26 26 H 1.08997 * 109.49438 * 294.76562 * 13 12 11 27 27 H 1.09005 * 109.45121 * 178.79465 * 14 13 12 28 28 H 1.08999 * 109.45094 * 58.87337 * 14 13 12 29 29 H 1.08998 * 109.34730 * 168.93009 * 16 15 14 30 30 H 1.09004 * 109.22548 * 49.31142 * 16 15 14 31 31 H 1.07996 * 117.97028 * 163.13465 * 17 16 15 32 32 H 1.08004 * 117.94711 * 180.53146 * 18 17 16 33 33 H 1.09002 * 109.36078 * 102.95144 * 19 18 17 34 34 H 1.09002 * 109.35676 * 222.66841 * 19 18 17 35 35 H 1.08997 * 109.46204 * 293.12567 * 20 15 14 36 36 H 1.08994 * 109.63705 * 172.63715 * 20 15 14 37 37 H 1.09009 * 109.57899 * 113.64662 * 21 11 9 38 38 H 1.08993 * 109.69200 * 353.31428 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6005 1.9816 -1.3941 5 1 1.3866 2.6825 0.5847 6 1 3.4776 1.4753 0.8094 7 6 2.0070 -1.2129 0.0005 8 1 1.4769 -2.1424 0.1468 9 6 3.4574 -1.2207 -0.1971 10 8 4.0242 -0.2156 -0.5836 11 7 4.1649 -2.3410 0.0489 12 6 3.5146 -3.5265 0.6239 13 6 3.8027 -4.7322 -0.2762 14 6 5.3153 -4.8754 -0.4616 15 6 5.8701 -3.6212 -1.1371 16 6 5.2024 -3.4278 -2.4985 17 6 5.6790 -4.4742 -3.4629 18 6 6.7396 -5.1948 -3.2852 19 6 7.6348 -5.0928 -2.0853 20 6 7.3768 -3.7763 -1.3488 21 6 5.6017 -2.4008 -0.2531 22 1 -0.4850 0.8400 -0.0004 23 1 3.9108 -3.7126 1.6221 24 1 2.4386 -3.3616 0.6805 25 1 3.4059 -5.6354 0.1873 26 1 3.3292 -4.5831 -1.2466 27 1 5.5239 -5.7454 -1.0842 28 1 5.7896 -5.0037 0.5114 29 1 5.4511 -2.4397 -2.8856 30 1 4.1215 -3.5087 -2.3829 31 1 5.1013 -4.6363 -4.3608 32 1 6.9964 -5.9144 -4.0486 33 1 7.4353 -5.9277 -1.4135 34 1 8.6757 -5.1287 -2.4069 35 1 7.8796 -3.7930 -0.3819 36 1 7.7506 -2.9439 -1.9449 37 1 6.1666 -2.4907 0.6748 38 1 5.9045 -1.4953 -0.7788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335741072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:59 Heat of formation + Delta-G solvation = -60.847281 kcal Electronic energy + Delta-G solvation = -19259.232828 eV Core-core repulsion = 16485.884282 eV Total energy + Delta-G solvation = -2773.348545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50067 -39.41761 -36.81453 -35.01306 -33.15862 -32.58327 -31.61205 -29.08189 -27.13693 -25.95916 -24.14311 -23.00328 -21.71700 -20.26825 -18.66945 -18.04579 -17.72045 -17.07600 -16.85005 -15.80443 -15.63563 -15.40932 -15.12732 -14.79792 -14.43867 -14.18114 -14.06918 -13.78299 -13.57307 -13.30752 -13.11379 -12.99808 -12.67583 -12.58692 -12.32295 -12.02059 -11.72298 -11.47088 -11.23936 -11.12553 -11.06182 -10.89208 -9.94935 -9.82173 -9.21208 -8.80343 -7.00533 1.30176 1.34237 1.45743 1.58123 2.09101 2.33387 2.71226 3.29974 3.65923 3.74759 3.87698 4.17222 4.24188 4.30315 4.32817 4.43850 4.51854 4.61697 4.64500 4.75585 4.81601 4.85923 4.92770 5.02829 5.04665 5.09238 5.11917 5.15437 5.22993 5.31799 5.34186 5.51380 5.58190 5.70442 5.83895 6.03375 6.12290 6.25115 6.63056 7.16942 8.00236 8.25369 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.006854 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.474267 B = 4084.238699 C = 4286.841836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.070 3.930 3 Si 1.011 2.989 4 H -0.295 1.295 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.550 3.450 10 O -0.649 6.649 11 N -0.627 5.627 12 C 0.113 3.887 13 C -0.131 4.131 14 C -0.096 4.096 15 C -0.064 4.064 16 C -0.078 4.078 17 C -0.164 4.164 18 C -0.149 4.149 19 C -0.085 4.085 20 C -0.106 4.106 21 C 0.126 3.874 22 H 0.291 0.709 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -13.596 -1.653 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.145 4.145 3 Si 0.844 3.156 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.215 1.215 7 C -0.587 4.587 8 H 0.103 0.897 9 C 0.357 3.643 10 O -0.544 6.544 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.065 4.065 16 C -0.115 4.115 17 C -0.182 4.182 18 C -0.167 4.167 19 C -0.122 4.122 20 C -0.144 4.144 21 C 0.003 3.997 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.926 -13.093 -1.829 18.489 hybrid contribution -0.358 1.147 -0.264 1.230 sum 12.569 -11.946 -2.093 17.466 Atomic orbital electron populations 1.69562 1.08203 1.30992 1.39266 1.26224 0.95280 1.03684 0.89355 0.84605 0.76302 0.76435 0.78243 1.22270 1.22805 1.21466 1.21013 0.90256 0.95615 1.51814 0.89712 1.18245 0.88065 0.81483 0.76458 1.90150 1.72849 1.34577 1.56846 1.47590 1.08630 1.13651 1.65932 1.21701 0.98526 0.84447 0.96253 1.21958 0.97576 0.97726 0.99652 1.21517 0.94355 0.96523 1.00928 1.20747 0.96581 0.95280 0.93843 1.20382 0.99797 0.96970 0.94387 1.21998 0.98671 0.98204 0.99346 1.22243 0.95651 0.99434 0.99346 1.20508 0.99253 0.97406 0.95027 1.21530 0.93217 0.98352 1.01276 1.21478 0.81640 0.98084 0.98494 0.89851 0.91354 0.90894 0.88894 0.93228 0.89962 0.90516 0.94092 0.92914 0.88226 0.86302 0.89085 0.89409 0.90035 0.92869 0.91613 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.90 13.92 21.84 0.30 -48.60 16 2 C 0.07 4.09 5.52 85.30 0.47 4.56 16 3 Si 1.01 54.28 25.86 68.60 1.77 56.06 16 4 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.29 -16.41 6.63 99.48 0.66 -15.75 16 7 C -0.55 -31.87 9.31 24.83 0.23 -31.64 16 8 H 0.08 4.89 6.04 -2.91 -0.02 4.87 16 9 C 0.55 30.15 7.33 86.36 0.63 30.79 16 10 O -0.65 -39.06 11.75 -4.31 -0.05 -39.11 16 11 N -0.63 -27.17 2.66 -824.20 -2.19 -29.36 16 12 C 0.11 4.03 6.35 86.36 0.55 4.58 16 13 C -0.13 -3.67 5.78 30.68 0.18 -3.49 16 14 C -0.10 -2.27 4.08 30.57 0.12 -2.15 16 15 C -0.06 -1.79 0.50 -52.27 -0.03 -1.82 16 16 C -0.08 -2.54 4.56 29.61 0.13 -2.41 16 17 C -0.16 -4.18 9.43 27.04 0.26 -3.93 16 18 C -0.15 -2.97 9.17 27.03 0.25 -2.72 16 19 C -0.09 -1.45 5.49 29.66 0.16 -1.29 16 20 C -0.11 -2.32 4.89 30.58 0.15 -2.17 16 21 C 0.13 4.60 5.08 86.31 0.44 5.04 16 22 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.07 2.95 5.36 -2.39 -0.01 2.94 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.60 6.18 -2.39 -0.01 1.58 16 27 H 0.08 1.69 5.71 -2.38 -0.01 1.68 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.54 8.05 -2.39 -0.02 1.52 16 30 H 0.05 1.98 5.83 -2.38 -0.01 1.97 16 31 H 0.10 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.09 1.30 6.92 -2.39 -0.02 1.29 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.05 2.26 6.99 -2.39 -0.02 2.24 16 Total: -1.00 -68.68 284.98 4.38 -64.31 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.00 Total: 3.34 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 3.55 Total: -6.64 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.89 Total: -77.96 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.05 Total: -39.11 kcal Atomic # 14 Polarization: 54.28 SS G_CDS: 1.77 Total: 56.06 kcal Total: -68.68 4.38 -64.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335741072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds