Wall clock time and date at job start Mon Mar 30 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 110.64102 * 2 1 4 4 C 1.38249 * 119.97210 * 118.03469 * 3 2 1 5 5 C 1.38207 * 120.01863 * 179.72939 * 4 3 2 6 6 C 1.38451 * 119.97798 * 0.57020 * 5 4 3 7 7 F 1.35100 * 120.02757 * 179.68615 * 6 5 4 8 8 C 1.38460 * 119.94974 * 359.70525 * 6 5 4 9 9 C 1.38205 * 119.97403 * 0.02562 * 8 6 5 10 10 C 1.55154 * 110.72048 * 123.33424 * 2 1 3 11 11 C 1.54910 * 101.58031 * 82.86432 * 10 2 1 12 12 N 1.47426 * 104.83209 * 37.01037 * 11 10 2 13 13 C 1.36937 * 125.64487 * 155.84912 * 12 11 10 14 14 H 1.08001 * 119.99600 * 180.02562 * 13 12 11 15 15 C 1.38807 * 120.00345 * 0.02772 * 13 12 11 16 16 N 1.31623 * 120.00215 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47445 * 59.99771 * 17 15 13 19 19 H 1.48507 * 109.46867 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46918 * 299.99556 * 17 15 13 21 21 C 1.47019 * 108.70209 * 335.87354 * 12 11 10 22 22 H 1.09004 * 109.47193 * 181.68328 * 1 2 3 23 23 H 1.09000 * 109.47586 * 301.68593 * 1 2 3 24 24 H 1.08999 * 109.47260 * 61.68979 * 1 2 3 25 25 H 1.07999 * 119.98952 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.00554 * 180.25636 * 5 4 3 27 27 H 1.07997 * 120.01951 * 179.97438 * 8 6 5 28 28 H 1.08001 * 119.98616 * 180.02562 * 9 8 6 29 29 H 1.09002 * 111.00945 * 324.79239 * 10 2 1 30 30 H 1.08999 * 111.00353 * 200.93777 * 10 2 1 31 31 H 1.08998 * 110.36709 * 278.17139 * 11 10 2 32 32 H 1.09005 * 110.36466 * 155.84673 * 11 10 2 33 33 H 0.96993 * 120.00387 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.88389 * 120.48020 * 21 12 11 35 35 H 1.09004 * 109.87600 * 241.48978 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0612 1.4103 0.0000 4 6 2.8314 1.8582 1.0571 5 6 3.3237 3.1495 1.0554 6 6 3.0356 3.9984 0.0003 7 9 3.5111 5.2630 0.0007 8 6 2.2593 3.5505 -1.0551 9 6 1.7726 2.2570 -1.0540 10 6 2.0789 -0.7975 1.2124 11 6 2.0126 -2.2520 0.6837 12 7 2.3716 -2.1518 -0.7427 13 6 2.8943 -3.1608 -1.5068 14 1 3.1251 -2.9860 -2.5473 15 6 3.1276 -4.4081 -0.9442 16 7 2.8468 -4.6210 0.3240 17 14 3.8413 -5.7842 -1.9865 18 1 5.1690 -5.3722 -2.5085 19 1 3.9938 -7.0060 -1.1561 20 1 2.9289 -6.0684 -3.1232 21 6 2.0761 -0.7891 -1.2086 22 1 -0.3634 -1.0272 0.0302 23 1 -0.3634 0.5398 0.8745 24 1 -0.3634 0.4874 -0.9047 25 1 3.0517 1.1975 1.8825 26 1 3.9289 3.4979 1.8794 27 1 2.0335 4.2119 -1.8785 28 1 1.1675 1.9073 -1.8774 29 1 1.4395 -0.6698 2.0860 30 1 3.1060 -0.5097 1.4366 31 1 1.0039 -2.6501 0.7939 32 1 2.7294 -2.8807 1.2120 33 1 3.0101 -5.4924 0.7173 34 1 2.9869 -0.3179 -1.5781 35 1 1.3283 -0.8223 -2.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335785538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:49 Heat of formation + Delta-G solvation = -13.682566 kcal Electronic energy + Delta-G solvation = -18059.452073 eV Core-core repulsion = 15164.688438 eV Total energy + Delta-G solvation = -2894.763635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84247 -40.95692 -38.63183 -35.22887 -32.63453 -32.21659 -30.54791 -29.62790 -27.56371 -25.87908 -23.91767 -23.43686 -21.82283 -20.18057 -18.90055 -18.60139 -17.03547 -17.00921 -16.54304 -16.44582 -15.93548 -15.55909 -14.86479 -14.67899 -14.46499 -14.30401 -14.00127 -13.75802 -13.27188 -13.10586 -12.90785 -12.79281 -12.60375 -12.45647 -12.12832 -11.96877 -11.75136 -11.58161 -11.37210 -11.16941 -10.69745 -9.99937 -9.46471 -8.85085 -7.75480 -5.19429 0.21278 0.33807 1.47098 1.50005 1.56405 2.50640 2.66595 3.32418 3.34379 3.59684 3.64334 3.89886 3.99071 4.03569 4.18652 4.28481 4.40986 4.50134 4.68812 4.74494 4.85226 4.95626 5.03631 5.07593 5.13247 5.15033 5.18989 5.21536 5.32327 5.47261 5.53046 5.67107 5.69654 5.86816 5.98881 6.33882 7.13374 7.81093 8.45171 9.25974 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037605 B = 0.005202 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.411260 B = 5380.865733 C = 5516.347585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.026 4.026 3 C -0.072 4.072 4 C -0.096 4.096 5 C -0.151 4.151 6 C 0.072 3.928 7 F -0.149 7.149 8 C -0.149 4.149 9 C -0.089 4.089 10 C -0.125 4.125 11 C 0.156 3.844 12 N -0.625 5.625 13 C -0.241 4.241 14 H 0.078 0.922 15 C -0.065 4.065 16 N -0.948 5.948 17 Si 0.978 3.022 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.148 3.852 22 H 0.042 0.958 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.068 0.932 31 H -0.011 1.011 32 H 0.070 0.930 33 H 0.247 0.753 34 H 0.017 0.983 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 15.694 0.973 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.026 4.026 3 C -0.072 4.072 4 C -0.114 4.114 5 C -0.170 4.170 6 C 0.053 3.947 7 F -0.127 7.127 8 C -0.168 4.168 9 C -0.107 4.107 10 C -0.163 4.163 11 C 0.031 3.969 12 N -0.351 5.351 13 C -0.370 4.370 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.598 5.598 17 Si 0.806 3.194 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.023 3.977 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.161 0.839 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.007 0.993 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.658 15.537 0.974 15.793 hybrid contribution 0.485 -0.901 -0.499 1.138 sum -2.174 14.636 0.476 14.804 Atomic orbital electron populations 1.21713 0.91962 1.01478 1.02782 1.20374 0.96412 0.90240 0.95589 1.19827 0.97724 0.94584 0.95093 1.21236 0.96161 0.95100 0.98928 1.21312 1.02684 0.93955 0.99058 1.17899 0.99461 0.79810 0.97532 1.91463 1.86896 1.37607 1.96780 1.21301 0.99330 0.97355 0.98819 1.21037 0.99120 0.92311 0.98243 1.23080 1.00752 0.95536 0.96963 1.21703 0.96934 0.93741 0.84520 1.44764 1.74064 1.07895 1.08334 1.19408 1.33742 0.90351 0.93462 0.90451 1.25587 1.02625 0.99872 0.97638 1.70045 1.55080 1.22290 1.12380 0.85157 0.78389 0.78320 0.77489 1.20439 1.21843 1.20474 1.21486 0.96364 0.84936 0.94880 0.93842 0.90951 0.91231 0.83909 0.83170 0.82888 0.83915 0.89553 0.91368 0.99259 0.91218 0.94348 0.96509 0.95666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.24 71.98 0.59 -2.89 16 2 C -0.03 -0.83 0.72 -51.74 -0.04 -0.87 16 3 C -0.07 -1.98 4.63 -19.86 -0.09 -2.07 16 4 C -0.10 -2.46 9.00 22.26 0.20 -2.26 16 5 C -0.15 -3.50 10.03 22.31 0.22 -3.28 16 6 C 0.07 1.72 7.30 22.37 0.16 1.88 16 7 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 8 C -0.15 -3.31 10.03 22.31 0.22 -3.09 16 9 C -0.09 -2.15 9.01 22.26 0.20 -1.95 16 10 C -0.13 -4.50 5.04 31.99 0.16 -4.33 16 11 C 0.16 7.62 5.57 86.86 0.48 8.11 16 12 N -0.62 -32.32 3.39 -691.99 -2.35 -34.67 16 13 C -0.24 -13.64 10.27 84.03 0.86 -12.77 16 14 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 15 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 16 N -0.95 -56.57 10.09 21.65 0.22 -56.35 16 17 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.15 6.11 6.14 86.73 0.53 6.64 16 22 H 0.04 1.44 7.44 -2.39 -0.02 1.42 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 25 H 0.14 3.44 5.88 -2.91 -0.02 3.42 16 26 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 27 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.14 3.04 7.77 -2.91 -0.02 3.02 16 29 H 0.09 2.65 8.04 -2.39 -0.02 2.63 16 30 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 31 H -0.01 -0.55 7.71 -2.39 -0.02 -0.57 16 32 H 0.07 3.92 5.87 -2.38 -0.01 3.90 16 33 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.02 0.71 7.82 -2.39 -0.02 0.69 16 35 H 0.03 1.02 7.85 -2.38 -0.02 1.01 16 Total: -1.00 -64.17 285.89 5.74 -58.43 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.08 Total: 7.67 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.98 Total: -20.10 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -2.13 Total: -91.02 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -64.17 5.74 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335785538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.752 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds