Wall clock time and date at job start Mon Mar 30 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.88569 * 2 1 4 4 C 1.38243 * 119.97354 * 242.14679 * 3 2 1 5 5 C 1.38200 * 120.02394 * 179.76372 * 4 3 2 6 6 C 1.38452 * 119.97241 * 0.51606 * 5 4 3 7 7 F 1.35105 * 120.02473 * 179.76261 * 6 5 4 8 8 C 1.38452 * 119.95169 * 359.74028 * 6 5 4 9 9 C 1.38195 * 119.97381 * 0.02562 * 8 6 5 10 10 C 1.55158 * 111.00526 * 236.07435 * 2 1 3 11 11 C 1.54316 * 102.94139 * 277.42839 * 10 2 1 12 12 N 1.47020 * 107.27568 * 337.80546 * 11 10 2 13 13 C 1.36938 * 125.65236 * 178.97773 * 12 11 10 14 14 H 1.07994 * 120.00035 * 179.97438 * 13 12 11 15 15 C 1.38811 * 119.99774 * 359.95644 * 13 12 11 16 16 N 1.31617 * 120.00082 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46763 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46850 * 120.00328 * 17 15 13 20 20 H 1.48497 * 109.47123 * 240.00366 * 17 15 13 21 21 C 1.47422 * 108.70191 * 358.94070 * 12 11 10 22 22 H 1.09000 * 109.46960 * 297.57238 * 1 2 3 23 23 H 1.08998 * 109.47247 * 57.57418 * 1 2 3 24 24 H 1.08999 * 109.46892 * 177.57541 * 1 2 3 25 25 H 1.07998 * 119.98495 * 0.02962 * 4 3 2 26 26 H 1.07998 * 120.01221 * 180.25516 * 5 4 3 27 27 H 1.08002 * 120.01540 * 180.02562 * 8 6 5 28 28 H 1.08005 * 119.98891 * 180.02562 * 9 8 6 29 29 H 1.09003 * 110.71801 * 35.79360 * 10 2 1 30 30 H 1.08999 * 110.71744 * 158.88398 * 10 2 1 31 31 H 1.09000 * 109.88340 * 97.22892 * 11 10 2 32 32 H 1.09005 * 109.88355 * 218.23652 * 11 10 2 33 33 H 0.97006 * 120.00279 * 180.02562 * 16 15 13 34 34 H 1.08998 * 110.36873 * 265.28987 * 21 12 11 35 35 H 1.09005 * 110.36491 * 142.96394 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0673 1.4080 0.0000 4 6 2.8362 1.8538 -1.0588 5 6 3.3254 3.1464 -1.0622 6 6 3.0539 3.9914 0.0004 7 9 3.5356 5.2537 0.0004 8 6 2.2881 3.5422 1.0628 9 6 1.7960 2.2508 1.0617 10 6 2.0862 -0.8084 -1.2019 11 6 2.0285 -2.2648 -0.6951 12 7 2.0139 -2.2156 0.7742 13 6 1.9460 -3.2993 1.6085 14 1 1.9415 -3.1572 2.6791 15 6 1.8827 -4.5806 1.0782 16 7 1.8884 -4.7538 -0.2265 17 14 1.7909 -6.0591 2.2163 18 1 1.7999 -5.5983 3.6279 19 1 0.5389 -6.8119 1.9497 20 1 2.9602 -6.9422 1.9758 21 6 2.0853 -0.8062 1.2007 22 1 -0.3633 0.4757 0.9110 23 1 -0.3633 0.5510 -0.8674 24 1 -0.3633 -1.0267 -0.0435 25 1 3.0512 1.1931 -1.8856 26 1 3.9226 3.4957 -1.8914 27 1 2.0754 4.2006 1.8920 28 1 1.1982 1.9002 1.8901 29 1 1.4524 -0.6800 -2.0794 30 1 3.1122 -0.5143 -1.4227 31 1 1.1219 -2.7483 -1.0589 32 1 2.9050 -2.8128 -1.0411 33 1 1.8438 -5.6491 -0.5972 34 1 3.1182 -0.5228 1.4027 35 1 1.4671 -0.6454 2.0840 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335785539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:55 Heat of formation + Delta-G solvation = 0.044067 kcal Electronic energy + Delta-G solvation = -18044.296748 eV Core-core repulsion = 15150.128344 eV Total energy + Delta-G solvation = -2894.168403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.83190 -39.69448 -37.22500 -33.38368 -31.21035 -30.84123 -28.96635 -28.32144 -25.86149 -24.22384 -22.80333 -22.21361 -19.96799 -18.85621 -17.67667 -16.87325 -15.99545 -15.53550 -15.41382 -14.76594 -14.36891 -14.07998 -13.48271 -13.39141 -13.15593 -13.11102 -12.76710 -11.99031 -11.92925 -11.55519 -11.42674 -11.09425 -11.05467 -10.80921 -10.74907 -10.13249 -10.04115 -9.87364 -9.77994 -9.65520 -9.02211 -8.58854 -8.38082 -6.81185 -5.70603 -3.03612 1.25855 1.31898 3.40003 3.45711 3.48019 3.69542 4.33141 4.50033 4.76117 4.90122 4.94278 5.16830 5.40047 5.44280 5.50694 5.62434 5.66854 5.77884 5.98351 6.12346 6.16706 6.19380 6.20282 6.28312 6.31856 6.50963 6.55552 6.63564 6.67401 6.83927 6.92668 7.02304 7.57702 7.63733 7.83986 8.26642 9.23194 9.83467 10.49819 11.41136 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.047404 B = 0.005002 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.521373 B = 5596.954083 C = 5769.737125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.043 4.043 3 C -0.057 4.057 4 C -0.092 4.092 5 C -0.153 4.153 6 C 0.079 3.921 7 F -0.147 7.147 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.139 4.139 11 C 0.179 3.821 12 N -0.603 5.603 13 C -0.226 4.226 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.152 3.848 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.251 0.749 34 H 0.019 0.981 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 14.563 -1.375 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.045 4.045 3 C -0.058 4.058 4 C -0.110 4.110 5 C -0.172 4.172 6 C 0.060 3.940 7 F -0.126 7.126 8 C -0.172 4.172 9 C -0.105 4.105 10 C -0.177 4.177 11 C 0.054 3.946 12 N -0.329 5.329 13 C -0.354 4.354 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.570 5.570 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.026 3.974 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.262 14.361 -1.383 14.430 hybrid contribution 0.139 -0.559 0.540 0.789 sum -0.124 13.803 -0.843 13.829 Atomic orbital electron populations 1.21637 0.93068 1.02802 1.00436 1.20733 0.95722 0.89174 0.98823 1.19982 0.96272 0.95833 0.93664 1.21157 0.96370 0.94514 0.98944 1.21117 1.03112 0.94496 0.98442 1.17700 0.99383 0.79882 0.97011 1.91465 1.86610 1.37760 1.96790 1.21081 1.00239 0.97454 0.98396 1.20916 0.98976 0.92206 0.98419 1.23089 0.99544 0.98734 0.96335 1.21120 1.01010 0.89087 0.83348 1.44440 1.86802 0.99628 1.02054 1.19102 1.43303 0.84037 0.89003 0.90441 1.24784 1.02346 0.97322 0.95987 1.69975 1.57194 1.20572 1.09235 0.86063 0.77239 0.82956 0.79632 1.20533 1.21793 1.21794 1.21559 0.96775 0.85506 0.93579 0.93180 0.93434 0.90981 0.84438 0.85145 0.85150 0.85056 0.91967 0.92056 0.93540 0.94054 0.93852 0.96381 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.41 37.16 0.31 -1.63 16 2 C -0.04 -0.73 0.75 -153.51 -0.11 -0.85 16 3 C -0.06 -0.83 4.77 -104.62 -0.50 -1.33 16 4 C -0.09 -1.24 8.99 -39.59 -0.36 -1.59 16 5 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16 6 C 0.08 1.03 7.30 -39.42 -0.29 0.75 16 7 F -0.15 -1.95 17.27 2.25 0.04 -1.91 16 8 C -0.15 -1.89 10.03 -39.52 -0.40 -2.28 16 9 C -0.09 -1.15 9.06 -39.60 -0.36 -1.51 16 10 C -0.14 -2.50 4.94 -24.90 -0.12 -2.62 16 11 C 0.18 4.25 4.99 -3.07 -0.02 4.24 16 12 N -0.60 -15.12 3.38 -170.07 -0.58 -15.69 16 13 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 16 N -0.92 -26.87 10.31 55.49 0.57 -26.29 16 17 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.15 3.10 5.90 -2.53 -0.01 3.08 16 22 H 0.05 0.72 7.76 -51.93 -0.40 0.32 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.33 7.81 -51.93 -0.41 0.93 16 25 H 0.14 1.72 5.91 -52.49 -0.31 1.41 16 26 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.58 7.83 -52.48 -0.41 1.17 16 29 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.06 1.03 6.36 -51.93 -0.33 0.70 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.02 0.38 8.03 -51.93 -0.42 -0.03 16 35 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -29.52 287.84 -7.85 -37.37 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.70 Total: -2.00 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.50 Total: -12.78 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.00 Total: -41.99 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.52 -7.85 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335785539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.417 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds