Wall clock time and date at job start Mon Mar 30 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.88569 * 2 1 4 4 C 1.38243 * 119.97354 * 242.14679 * 3 2 1 5 5 C 1.38200 * 120.02394 * 179.76372 * 4 3 2 6 6 C 1.38452 * 119.97241 * 0.51606 * 5 4 3 7 7 F 1.35105 * 120.02473 * 179.76261 * 6 5 4 8 8 C 1.38452 * 119.95169 * 359.74028 * 6 5 4 9 9 C 1.38195 * 119.97381 * 0.02562 * 8 6 5 10 10 C 1.55158 * 111.00526 * 236.07435 * 2 1 3 11 11 C 1.54316 * 102.94139 * 277.42839 * 10 2 1 12 12 N 1.47020 * 107.27568 * 337.80546 * 11 10 2 13 13 C 1.36938 * 125.65236 * 178.97773 * 12 11 10 14 14 H 1.07994 * 120.00035 * 179.97438 * 13 12 11 15 15 C 1.38811 * 119.99774 * 359.95644 * 13 12 11 16 16 N 1.31617 * 120.00082 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46763 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46850 * 120.00328 * 17 15 13 20 20 H 1.48497 * 109.47123 * 240.00366 * 17 15 13 21 21 C 1.47422 * 108.70191 * 358.94070 * 12 11 10 22 22 H 1.09000 * 109.46960 * 297.57238 * 1 2 3 23 23 H 1.08998 * 109.47247 * 57.57418 * 1 2 3 24 24 H 1.08999 * 109.46892 * 177.57541 * 1 2 3 25 25 H 1.07998 * 119.98495 * 0.02962 * 4 3 2 26 26 H 1.07998 * 120.01221 * 180.25516 * 5 4 3 27 27 H 1.08002 * 120.01540 * 180.02562 * 8 6 5 28 28 H 1.08005 * 119.98891 * 180.02562 * 9 8 6 29 29 H 1.09003 * 110.71801 * 35.79360 * 10 2 1 30 30 H 1.08999 * 110.71744 * 158.88398 * 10 2 1 31 31 H 1.09000 * 109.88340 * 97.22892 * 11 10 2 32 32 H 1.09005 * 109.88355 * 218.23652 * 11 10 2 33 33 H 0.97006 * 120.00279 * 180.02562 * 16 15 13 34 34 H 1.08998 * 110.36873 * 265.28987 * 21 12 11 35 35 H 1.09005 * 110.36491 * 142.96394 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0673 1.4080 0.0000 4 6 2.8362 1.8538 -1.0588 5 6 3.3254 3.1464 -1.0622 6 6 3.0539 3.9914 0.0004 7 9 3.5356 5.2537 0.0004 8 6 2.2881 3.5422 1.0628 9 6 1.7960 2.2508 1.0617 10 6 2.0862 -0.8084 -1.2019 11 6 2.0285 -2.2648 -0.6951 12 7 2.0139 -2.2156 0.7742 13 6 1.9460 -3.2993 1.6085 14 1 1.9415 -3.1572 2.6791 15 6 1.8827 -4.5806 1.0782 16 7 1.8884 -4.7538 -0.2265 17 14 1.7909 -6.0591 2.2163 18 1 1.7999 -5.5983 3.6279 19 1 0.5389 -6.8119 1.9497 20 1 2.9602 -6.9422 1.9758 21 6 2.0853 -0.8062 1.2007 22 1 -0.3633 0.4757 0.9110 23 1 -0.3633 0.5510 -0.8674 24 1 -0.3633 -1.0267 -0.0435 25 1 3.0512 1.1931 -1.8856 26 1 3.9226 3.4957 -1.8914 27 1 2.0754 4.2006 1.8920 28 1 1.1982 1.9002 1.8901 29 1 1.4524 -0.6800 -2.0794 30 1 3.1122 -0.5143 -1.4227 31 1 1.1219 -2.7483 -1.0589 32 1 2.9050 -2.8128 -1.0411 33 1 1.8438 -5.6491 -0.5972 34 1 3.1182 -0.5228 1.4027 35 1 1.4671 -0.6454 2.0840 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335785539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:53 Heat of formation + Delta-G solvation = -15.298538 kcal Electronic energy + Delta-G solvation = -18044.962053 eV Core-core repulsion = 15150.128344 eV Total energy + Delta-G solvation = -2894.833709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.82925 -40.92974 -38.64678 -35.16725 -32.62508 -32.20459 -30.52715 -29.64839 -27.59402 -25.89554 -23.91612 -23.44096 -21.75287 -20.20392 -18.89455 -18.57641 -17.06561 -16.91903 -16.53167 -16.49384 -15.88284 -15.54528 -14.80529 -14.68679 -14.41843 -14.38887 -14.08316 -13.70613 -13.20643 -13.13323 -12.91196 -12.85010 -12.65267 -12.35279 -12.10696 -11.91297 -11.79239 -11.53825 -11.38867 -11.25018 -10.67476 -9.98677 -9.45490 -8.85600 -7.82971 -5.17736 0.22383 0.35190 1.46867 1.47391 1.57732 2.50585 2.67977 3.34252 3.36136 3.55613 3.63866 3.92357 4.00802 4.05324 4.20358 4.26186 4.42134 4.51559 4.66938 4.75599 4.86395 4.94243 5.05345 5.06765 5.13692 5.16675 5.19316 5.23131 5.34366 5.48075 5.54133 5.66431 5.72939 5.83125 5.99943 6.22458 7.13129 7.80554 8.45375 9.27584 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.047404 B = 0.005002 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.521373 B = 5596.954083 C = 5769.737125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.071 4.071 4 C -0.096 4.096 5 C -0.151 4.151 6 C 0.072 3.928 7 F -0.149 7.149 8 C -0.150 4.150 9 C -0.088 4.088 10 C -0.126 4.126 11 C 0.187 3.813 12 N -0.623 5.623 13 C -0.239 4.239 14 H 0.082 0.918 15 C -0.066 4.066 16 N -0.951 5.951 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.294 1.294 21 C 0.148 3.852 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.012 0.988 32 H 0.002 0.998 33 H 0.246 0.754 34 H 0.016 0.984 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 16.552 -0.814 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.071 4.071 4 C -0.114 4.114 5 C -0.169 4.169 6 C 0.053 3.947 7 F -0.128 7.128 8 C -0.168 4.168 9 C -0.106 4.106 10 C -0.164 4.164 11 C 0.062 3.938 12 N -0.349 5.349 13 C -0.368 4.368 14 H 0.099 0.901 15 C -0.258 4.258 16 N -0.601 5.601 17 Si 0.804 3.196 18 H -0.190 1.190 19 H -0.219 1.219 20 H -0.221 1.221 21 C 0.023 3.977 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.314 16.390 -0.805 16.413 hybrid contribution 0.186 -1.101 0.386 1.181 sum -0.128 15.290 -0.419 15.296 Atomic orbital electron populations 1.21598 0.92386 1.01179 1.02374 1.20516 0.96179 0.90120 0.95909 1.19774 0.97725 0.94516 0.95123 1.21234 0.96138 0.95105 0.98874 1.21312 1.02763 0.93928 0.98922 1.17910 0.99460 0.79911 0.97424 1.91466 1.86637 1.37871 1.96813 1.21292 0.99381 0.97325 0.98809 1.21023 0.99016 0.92354 0.98246 1.22967 1.01170 0.94762 0.97479 1.20866 0.97481 0.92308 0.83122 1.44725 1.86544 1.01171 1.02482 1.19493 1.42385 0.85229 0.89711 0.90063 1.25606 1.02796 1.00033 0.97408 1.70197 1.58452 1.20561 1.10870 0.85043 0.76655 0.79351 0.78502 1.18999 1.21918 1.22092 1.21724 0.96871 0.83647 0.95480 0.91494 0.91273 0.94300 0.83726 0.83103 0.82982 0.84025 0.89873 0.90633 0.96993 0.97976 0.94507 0.96671 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 8.41 71.98 0.61 -2.97 16 2 C -0.03 -0.85 0.75 -51.53 -0.04 -0.88 16 3 C -0.07 -1.88 4.77 -19.86 -0.09 -1.97 16 4 C -0.10 -2.30 8.99 22.26 0.20 -2.10 16 5 C -0.15 -3.29 10.03 22.31 0.22 -3.07 16 6 C 0.07 1.65 7.30 22.37 0.16 1.82 16 7 F -0.15 -3.51 17.27 44.97 0.78 -2.74 16 8 C -0.15 -3.20 10.03 22.31 0.22 -2.98 16 9 C -0.09 -2.07 9.06 22.26 0.20 -1.87 16 10 C -0.13 -4.44 4.94 31.78 0.16 -4.28 16 11 C 0.19 9.20 4.99 86.73 0.43 9.63 16 12 N -0.62 -31.85 3.38 -691.99 -2.34 -34.19 16 13 C -0.24 -13.42 10.28 84.03 0.86 -12.56 16 14 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 15 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 16 N -0.95 -57.52 10.31 21.65 0.22 -57.30 16 17 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 C 0.15 5.94 5.90 86.86 0.51 6.45 16 22 H 0.07 1.78 7.76 -2.39 -0.02 1.76 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.04 1.43 7.81 -2.39 -0.02 1.41 16 25 H 0.15 3.21 5.91 -2.91 -0.02 3.19 16 26 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.14 2.97 7.83 -2.91 -0.02 2.95 16 29 H 0.08 2.58 8.05 -2.39 -0.02 2.57 16 30 H 0.08 2.45 6.36 -2.39 -0.02 2.43 16 31 H 0.01 0.65 7.38 -2.39 -0.02 0.64 16 32 H 0.00 0.11 7.50 -2.38 -0.02 0.09 16 33 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 34 H 0.02 0.63 8.03 -2.39 -0.02 0.61 16 35 H 0.05 1.74 8.05 -2.38 -0.02 1.72 16 Total: -1.00 -64.93 287.84 5.68 -59.25 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.08 Total: 5.07 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 3.92 Total: -18.07 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -2.12 Total: -91.49 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -64.93 5.68 -59.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335785539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.954 kcal (2) G-P(sol) polarization free energy of solvation -64.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds