Wall clock time and date at job start Mon Mar 30 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47403 * 240.00263 * 3 2 1 5 5 H 1.48507 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46854 * 120.00384 * 3 2 1 7 7 C 1.37870 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00390 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.05533 * 59.95712 * 9 7 2 11 11 C 1.53876 * 110.03013 * 298.54810 * 9 7 2 12 12 C 1.54267 * 106.59870 * 240.71414 * 11 9 7 13 13 C 1.54891 * 104.19324 * 336.39035 * 12 11 9 14 14 H 1.09001 * 110.91358 * 279.55140 * 13 12 11 15 15 N 1.46497 * 110.75539 * 156.25897 * 13 12 11 16 16 C 1.34781 * 120.00313 * 91.67040 * 15 13 12 17 17 O 1.21611 * 119.99696 * 359.97438 * 16 15 13 18 18 C 1.47094 * 120.00327 * 180.02562 * 16 15 13 19 19 C 1.32613 * 124.62220 * 180.02562 * 18 16 15 20 20 C 1.51114 * 110.75947 * 179.97438 * 19 18 16 21 21 C 1.54583 * 104.83905 * 16.59574 * 20 19 18 22 22 C 1.51114 * 124.61802 * 359.71964 * 18 16 15 23 23 C 1.54261 * 110.03593 * 181.37895 * 9 7 2 24 24 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.03160 * 359.97438 * 11 9 7 26 26 H 1.08998 * 110.03319 * 121.42692 * 11 9 7 27 27 H 1.09004 * 110.48597 * 95.06674 * 12 11 9 28 28 H 1.08994 * 110.48679 * 217.71200 * 12 11 9 29 29 H 0.97001 * 120.00340 * 271.66811 * 15 13 12 30 30 H 1.08000 * 124.61999 * 359.97438 * 19 18 16 31 31 H 1.08999 * 110.36784 * 135.43817 * 20 19 18 32 32 H 1.09001 * 110.36525 * 257.76202 * 20 19 18 33 33 H 1.09000 * 110.97835 * 93.07775 * 21 20 19 34 34 H 1.09006 * 110.98339 * 216.86982 * 21 20 19 35 35 H 1.08996 * 110.37191 * 282.24322 * 22 18 16 36 36 H 1.09004 * 110.36992 * 44.56517 * 22 18 16 37 37 H 1.09000 * 110.48928 * 261.57113 * 23 9 7 38 38 H 1.08999 * 110.48469 * 24.21522 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6199 -2.5664 -0.8866 11 6 0.3897 -2.6105 1.2697 12 6 0.8870 -3.8563 2.0315 13 6 1.5493 -4.7309 0.9381 14 1 0.7986 -5.2883 0.3780 15 7 2.5356 -5.6399 1.5272 16 6 2.1664 -6.8782 1.9106 17 8 1.0144 -7.2407 1.7678 18 6 3.1566 -7.7908 2.5026 19 6 2.8945 -9.0252 2.9102 20 6 4.1374 -9.6811 3.4655 21 6 5.1170 -8.5145 3.7284 22 6 4.6125 -7.4516 2.7232 23 6 2.2416 -3.6812 0.0337 24 1 -0.4851 0.8400 0.0004 25 1 0.5170 -1.7208 1.8863 26 1 -0.6594 -2.7318 1.0000 27 1 1.6182 -3.5737 2.7889 28 1 0.0494 -4.3845 2.4870 29 1 3.4544 -5.3507 1.6414 30 1 1.9249 -9.4973 2.8530 31 1 3.9086 -10.2012 4.3957 32 1 4.5590 -10.3733 2.7366 33 1 5.0324 -8.1577 4.7548 34 1 6.1423 -8.8071 3.5017 35 1 5.1645 -7.5209 1.7859 36 1 4.7092 -6.4526 3.1483 37 1 2.3926 -4.0817 -0.9688 38 1 3.1916 -3.3703 0.4684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336287406.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:01 Heat of formation + Delta-G solvation = -46.071269 kcal Electronic energy + Delta-G solvation = -17935.125088 eV Core-core repulsion = 15162.417278 eV Total energy + Delta-G solvation = -2772.707809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89731 -38.03816 -36.82376 -33.70971 -31.98067 -29.58688 -28.62856 -28.07974 -26.78109 -23.90367 -22.17165 -20.98451 -19.94924 -19.11432 -18.37576 -17.11951 -16.41689 -15.80914 -15.50857 -14.68939 -14.43261 -14.29718 -14.13454 -13.03363 -12.89673 -12.50500 -12.40363 -12.19986 -11.81842 -11.71433 -11.47242 -11.38291 -11.11542 -10.89831 -10.79112 -10.54769 -10.37017 -9.95106 -9.66880 -9.61291 -9.24128 -9.07766 -8.69641 -8.52111 -8.33427 -5.99449 -4.03344 1.38619 3.31796 3.37162 3.38662 3.46914 3.53670 4.33642 4.41381 4.44644 4.75837 4.94696 5.11491 5.31279 5.41775 5.46144 5.53591 5.58523 5.63077 5.68822 5.74571 5.87854 5.93660 6.20543 6.37794 6.40001 6.43906 6.54501 6.65571 6.74635 6.95695 6.98178 7.28532 7.37674 7.73109 7.86074 7.92887 7.99888 8.46406 8.51167 8.99501 9.60368 11.09630 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.004308 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.076858 B = 6497.250125 C = 6916.159723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.090 4.090 12 C -0.132 4.132 13 C 0.133 3.867 14 H 0.088 0.912 15 N -0.711 5.711 16 C 0.559 3.441 17 O -0.549 6.549 18 C -0.188 4.188 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.118 4.118 24 H 0.260 0.740 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.397 0.603 30 H 0.137 0.863 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 -15.375 6.481 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.106 0.894 15 N -0.360 5.360 16 C 0.347 3.653 17 O -0.428 6.428 18 C -0.191 4.191 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.161 4.161 22 C -0.130 4.130 23 C -0.156 4.156 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.231 0.769 30 H 0.154 0.846 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.540 -15.468 6.358 18.778 hybrid contribution 0.811 1.158 0.066 1.415 sum 9.351 -14.310 6.425 18.262 Atomic orbital electron populations 1.69976 1.05849 1.26572 1.50198 1.24982 0.94838 0.98994 0.95260 0.86712 0.79627 0.83410 0.78536 1.20336 1.21357 1.20347 1.21184 0.92634 0.90440 1.51009 0.92753 1.19198 0.92287 0.91382 0.94278 0.95283 1.22022 0.98186 0.94576 0.98089 1.22783 0.99199 0.97535 0.97568 1.22259 0.90679 0.89349 0.94827 0.89366 1.46086 1.13671 1.13796 1.62441 1.17996 0.87471 0.81809 0.78072 1.90772 1.19666 1.76452 1.55915 1.21961 0.95863 0.96527 1.04703 1.24001 0.98935 0.94134 0.93322 1.21464 0.93380 0.98278 1.01149 1.22459 0.98935 0.95086 0.99574 1.21299 0.91862 1.00031 0.99833 1.22756 0.99991 0.95830 0.97040 0.92996 0.91563 0.94128 0.92559 0.93218 0.76852 0.84566 0.90405 0.89835 0.90803 0.90619 0.90160 0.90652 0.93147 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.33 55.43 0.68 -24.80 16 2 C 0.06 1.68 5.07 -17.82 -0.09 1.59 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.86 8.34 -34.44 -0.29 -14.14 16 8 H 0.05 1.43 7.55 -52.49 -0.40 1.03 16 9 C 0.05 1.17 2.84 -90.65 -0.26 0.91 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.13 5.56 -25.61 -0.14 -2.28 16 12 C -0.13 -2.66 6.51 -25.07 -0.16 -2.82 16 13 C 0.13 2.50 3.27 -65.94 -0.22 2.28 16 14 H 0.09 1.79 7.55 -51.93 -0.39 1.40 16 15 N -0.71 -11.22 5.17 -53.06 -0.27 -11.50 16 16 C 0.56 9.17 7.79 -12.67 -0.10 9.07 16 17 O -0.55 -11.09 16.41 5.27 0.09 -11.00 16 18 C -0.19 -2.34 6.09 -102.73 -0.63 -2.96 16 19 C -0.08 -0.92 10.43 -36.01 -0.38 -1.30 16 20 C -0.11 -0.81 6.80 -26.85 -0.18 -0.99 16 21 C -0.12 -0.91 7.17 -24.98 -0.18 -1.09 16 22 C -0.09 -0.86 6.04 -26.76 -0.16 -1.02 16 23 C -0.12 -2.37 5.97 -25.08 -0.15 -2.52 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.07 1.72 7.17 -51.93 -0.37 1.35 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 5.23 7.57 -40.82 -0.31 4.92 16 30 H 0.14 1.53 8.03 -52.49 -0.42 1.11 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.18 7.56 -51.93 -0.39 0.79 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -30.65 309.63 -8.84 -39.49 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.05 Total: 2.36 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.93 Total: -15.27 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.41 Total: -36.30 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.65 -8.84 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336287406.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.584 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds