Wall clock time and date at job start Mon Mar 30 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47403 * 240.00263 * 3 2 1 5 5 H 1.48507 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46854 * 120.00384 * 3 2 1 7 7 C 1.37870 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00390 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.05533 * 59.95712 * 9 7 2 11 11 C 1.53876 * 110.03013 * 298.54810 * 9 7 2 12 12 C 1.54267 * 106.59870 * 240.71414 * 11 9 7 13 13 C 1.54891 * 104.19324 * 336.39035 * 12 11 9 14 14 H 1.09001 * 110.91358 * 279.55140 * 13 12 11 15 15 N 1.46497 * 110.75539 * 156.25897 * 13 12 11 16 16 C 1.34781 * 120.00313 * 91.67040 * 15 13 12 17 17 O 1.21611 * 119.99696 * 359.97438 * 16 15 13 18 18 C 1.47094 * 120.00327 * 180.02562 * 16 15 13 19 19 C 1.32613 * 124.62220 * 180.02562 * 18 16 15 20 20 C 1.51114 * 110.75947 * 179.97438 * 19 18 16 21 21 C 1.54583 * 104.83905 * 16.59574 * 20 19 18 22 22 C 1.51114 * 124.61802 * 359.71964 * 18 16 15 23 23 C 1.54261 * 110.03593 * 181.37895 * 9 7 2 24 24 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.03160 * 359.97438 * 11 9 7 26 26 H 1.08998 * 110.03319 * 121.42692 * 11 9 7 27 27 H 1.09004 * 110.48597 * 95.06674 * 12 11 9 28 28 H 1.08994 * 110.48679 * 217.71200 * 12 11 9 29 29 H 0.97001 * 120.00340 * 271.66811 * 15 13 12 30 30 H 1.08000 * 124.61999 * 359.97438 * 19 18 16 31 31 H 1.08999 * 110.36784 * 135.43817 * 20 19 18 32 32 H 1.09001 * 110.36525 * 257.76202 * 20 19 18 33 33 H 1.09000 * 110.97835 * 93.07775 * 21 20 19 34 34 H 1.09006 * 110.98339 * 216.86982 * 21 20 19 35 35 H 1.08996 * 110.37191 * 282.24322 * 22 18 16 36 36 H 1.09004 * 110.36992 * 44.56517 * 22 18 16 37 37 H 1.09000 * 110.48928 * 261.57113 * 23 9 7 38 38 H 1.08999 * 110.48469 * 24.21522 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6199 -2.5664 -0.8866 11 6 0.3897 -2.6105 1.2697 12 6 0.8870 -3.8563 2.0315 13 6 1.5493 -4.7309 0.9381 14 1 0.7986 -5.2883 0.3780 15 7 2.5356 -5.6399 1.5272 16 6 2.1664 -6.8782 1.9106 17 8 1.0144 -7.2407 1.7678 18 6 3.1566 -7.7908 2.5026 19 6 2.8945 -9.0252 2.9102 20 6 4.1374 -9.6811 3.4655 21 6 5.1170 -8.5145 3.7284 22 6 4.6125 -7.4516 2.7232 23 6 2.2416 -3.6812 0.0337 24 1 -0.4851 0.8400 0.0004 25 1 0.5170 -1.7208 1.8863 26 1 -0.6594 -2.7318 1.0000 27 1 1.6182 -3.5737 2.7889 28 1 0.0494 -4.3845 2.4870 29 1 3.4544 -5.3507 1.6414 30 1 1.9249 -9.4973 2.8530 31 1 3.9086 -10.2012 4.3957 32 1 4.5590 -10.3733 2.7366 33 1 5.0324 -8.1577 4.7548 34 1 6.1423 -8.8071 3.5017 35 1 5.1645 -7.5209 1.7859 36 1 4.7092 -6.4526 3.1483 37 1 2.3926 -4.0817 -0.9688 38 1 3.1916 -3.3703 0.4684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336287406.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:01 Heat of formation + Delta-G solvation = -64.210934 kcal Electronic energy + Delta-G solvation = -17935.911683 eV Core-core repulsion = 15162.417278 eV Total energy + Delta-G solvation = -2773.494404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12116 -39.21484 -38.25390 -35.37797 -33.84088 -30.54394 -29.92471 -29.41298 -28.32560 -25.82476 -23.36463 -21.82200 -21.40196 -20.93537 -19.59807 -18.34280 -18.09662 -17.11794 -16.56958 -16.49930 -16.12918 -15.61043 -15.51054 -14.41547 -14.18199 -13.85433 -13.63771 -13.53634 -13.04063 -12.91299 -12.70763 -12.58780 -12.48515 -12.38614 -12.23130 -12.01855 -11.95905 -11.71551 -11.56774 -11.17448 -10.91820 -10.74144 -10.45820 -10.09834 -9.77396 -8.09822 -6.20662 0.40263 1.44118 1.45303 1.52741 2.25563 2.28803 2.46019 3.21021 3.55162 3.67607 3.89146 3.99600 4.14906 4.17667 4.25067 4.34274 4.65532 4.75852 4.81294 4.84277 4.85313 4.94106 4.96362 5.00611 5.01233 5.12534 5.20960 5.33392 5.38160 5.41416 5.43090 5.56415 5.62195 5.67231 5.91345 5.94066 6.38700 6.61717 6.91318 7.25277 7.47104 8.99008 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.004308 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.076858 B = 6497.250125 C = 6916.159723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.081 4.081 12 C -0.121 4.121 13 C 0.146 3.854 14 H 0.071 0.929 15 N -0.701 5.701 16 C 0.555 3.445 17 O -0.596 6.596 18 C -0.214 4.214 19 C -0.072 4.072 20 C -0.102 4.102 21 C -0.118 4.118 22 C -0.090 4.090 23 C -0.103 4.103 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.020 0.980 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.413 0.587 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.446 -16.429 7.465 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.018 3.982 10 H 0.013 0.987 11 C -0.120 4.120 12 C -0.159 4.159 13 C 0.041 3.959 14 H 0.089 0.911 15 N -0.350 5.350 16 C 0.345 3.655 17 O -0.479 6.479 18 C -0.217 4.217 19 C -0.092 4.092 20 C -0.138 4.138 21 C -0.155 4.155 22 C -0.127 4.127 23 C -0.142 4.142 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.250 0.750 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.514 -16.528 7.349 21.442 hybrid contribution -0.167 1.417 -0.251 1.449 sum 11.347 -15.111 7.098 20.186 Atomic orbital electron populations 1.70123 1.07449 1.27248 1.51324 1.25808 0.95608 1.02628 0.94995 0.85655 0.78323 0.78955 0.78983 1.19491 1.21512 1.19325 1.21577 0.93151 0.91447 1.50422 0.92026 1.19204 0.92962 0.92904 0.93084 0.98678 1.21811 0.97129 0.95194 0.97855 1.22648 0.99554 0.95971 0.97766 1.21831 0.90853 0.89225 0.93973 0.91074 1.45858 1.13782 1.13345 1.62041 1.18662 0.87646 0.81996 0.77195 1.90745 1.21922 1.77285 1.57915 1.21924 0.96885 0.96450 1.06409 1.24360 0.99967 0.93699 0.91182 1.21547 0.91612 0.98582 1.02101 1.22490 0.99843 0.94004 0.99176 1.21349 0.89514 1.00909 1.00967 1.22553 0.99245 0.94196 0.98162 0.93201 0.94197 0.96108 0.91237 0.93266 0.74987 0.85649 0.88731 0.88078 0.90476 0.88463 0.89234 0.90402 0.92090 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 12.33 21.44 0.26 -54.08 16 2 C 0.01 0.45 5.07 84.65 0.43 0.88 16 3 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.53 -28.54 8.34 25.60 0.21 -28.33 16 8 H 0.06 3.17 7.55 -2.91 -0.02 3.15 16 9 C 0.04 1.88 2.84 -10.82 -0.03 1.85 16 10 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 11 C -0.08 -3.97 5.56 31.32 0.17 -3.80 16 12 C -0.12 -4.87 6.51 31.67 0.21 -4.67 16 13 C 0.15 5.47 3.27 46.28 0.15 5.62 16 14 H 0.07 2.94 7.55 -2.39 -0.02 2.93 16 15 N -0.70 -21.26 5.17 -440.03 -2.28 -23.54 16 16 C 0.55 17.86 7.79 86.57 0.67 18.53 16 17 O -0.60 -24.41 16.41 -4.07 -0.07 -24.48 16 18 C -0.21 -4.96 6.09 -18.57 -0.11 -5.07 16 19 C -0.07 -1.44 10.43 24.66 0.26 -1.18 16 20 C -0.10 -1.19 6.80 30.52 0.21 -0.98 16 21 C -0.12 -1.27 7.17 31.73 0.23 -1.05 16 22 C -0.09 -1.39 6.04 30.57 0.18 -1.21 16 23 C -0.10 -4.08 5.97 31.67 0.19 -3.89 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.04 2.13 7.17 -2.39 -0.02 2.11 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 29 H 0.41 9.96 7.57 -92.71 -0.70 9.25 16 30 H 0.13 2.73 8.03 -2.91 -0.02 2.70 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.15 7.82 -2.39 -0.02 1.13 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 2.78 7.56 -2.39 -0.02 2.76 16 Total: -1.00 -67.78 309.63 3.06 -64.72 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.34 Total: 15.42 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.77 Total: -23.29 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.01 Total: -77.61 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.78 3.06 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336287406.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.514 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds