Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46877 * 2 1 4 4 C 1.50698 * 109.47421 * 120.00800 * 2 1 3 5 5 H 1.07994 * 120.00160 * 120.00278 * 4 2 1 6 6 C 1.37874 * 119.99810 * 299.99645 * 4 2 1 7 7 N 1.31521 * 120.00170 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47279 * 90.00214 * 8 6 4 10 10 H 1.48500 * 109.47251 * 210.00413 * 8 6 4 11 11 H 1.48501 * 109.46774 * 330.00325 * 8 6 4 12 12 N 1.46905 * 109.46907 * 240.00854 * 2 1 3 13 13 C 1.46895 * 111.00330 * 84.99790 * 12 2 1 14 14 H 1.09003 * 115.55120 * 9.32511 * 13 12 2 15 15 C 1.52996 * 117.52002 * 223.62769 * 13 12 2 16 16 C 1.52998 * 60.00111 * 252.51818 * 15 13 12 17 17 H 1.09000 * 117.52020 * 107.48453 * 16 15 13 18 18 C 1.50699 * 117.49539 * 252.51030 * 16 15 13 19 19 C 1.38270 * 119.99120 * 8.64329 * 18 16 15 20 20 C 1.38221 * 120.05301 * 180.02562 * 19 18 16 21 21 C 1.38217 * 120.02394 * 359.70258 * 20 19 18 22 22 C 1.38442 * 119.97538 * 0.52749 * 21 20 19 23 23 F 1.35104 * 120.02527 * 179.76861 * 22 21 20 24 24 C 1.38176 * 119.98426 * 188.62295 * 18 16 15 25 25 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46835 * 299.99415 * 1 2 3 27 27 H 1.08996 * 109.47145 * 59.99289 * 1 2 3 28 28 H 0.97001 * 120.00244 * 179.97438 * 7 6 4 29 29 H 1.00897 * 111.00304 * 321.04070 * 12 2 1 30 30 H 1.09005 * 117.50152 * 145.02267 * 15 13 12 31 31 H 1.09006 * 117.49897 * 0.02562 * 15 13 12 32 32 H 1.08001 * 119.96959 * 0.02562 * 19 18 16 33 33 H 1.07993 * 119.98770 * 179.97438 * 20 19 18 34 34 H 1.08007 * 120.01392 * 180.27288 * 21 20 19 35 35 H 1.07995 * 120.01616 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.6306 -0.5444 4.4117 10 1 1.3446 -0.9495 5.1121 11 1 2.4882 -2.5657 3.7118 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2228 -2.3469 14 1 1.9216 1.2762 -2.1174 15 6 1.5678 -0.2936 -3.6920 16 6 3.0702 -0.1136 -3.4658 17 1 3.6736 -1.0141 -3.3506 18 6 3.7465 1.0367 -4.1661 19 6 2.9884 1.9837 -4.8297 20 6 3.6074 3.0390 -5.4730 21 6 4.9847 3.1521 -5.4483 22 6 5.7450 2.2019 -4.7882 23 9 7.0916 2.3089 -4.7675 24 6 5.1238 1.1448 -4.1445 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7083 1.1605 3.4845 29 1 1.4496 -1.4978 -1.4103 30 1 1.0684 0.4200 -4.3475 31 1 1.1821 -1.3126 -3.7258 32 1 1.9119 1.8987 -4.8455 33 1 3.0143 3.7779 -5.9913 34 1 5.4679 3.9792 -5.9473 35 1 5.7157 0.4050 -3.6262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378665150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = 0.550646 kcal Electronic energy + Delta-G solvation = -17257.148311 eV Core-core repulsion = 14363.001875 eV Total energy + Delta-G solvation = -2894.146436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.86918 -39.51646 -37.23984 -34.58021 -31.94654 -30.89107 -29.98077 -27.31172 -25.14468 -23.85561 -22.73781 -21.20877 -20.38968 -20.13193 -17.38305 -16.39121 -16.20733 -16.12637 -15.56492 -15.19071 -14.70601 -14.36118 -13.79834 -13.27126 -13.02255 -12.63935 -12.46468 -12.38882 -11.96571 -11.79330 -11.48903 -11.10211 -10.95609 -10.88895 -10.69208 -10.53256 -10.19092 -10.10672 -9.79024 -9.10339 -8.82618 -8.52615 -8.38257 -7.22547 -6.01062 -4.04594 1.15861 1.21657 3.32364 3.38498 3.42331 3.51885 4.14562 4.35043 4.41289 4.61731 4.81986 4.95538 5.07835 5.21245 5.22830 5.30685 5.35460 5.45346 5.73122 5.82784 5.94624 6.07155 6.13308 6.26936 6.27055 6.33620 6.64885 6.66563 6.81994 6.90726 7.04430 7.30179 7.70494 7.85141 8.22589 8.44389 8.54721 9.02089 9.60835 11.06072 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.004613 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.445539 B = 6067.824993 C = 6580.028547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.213 3.787 3 H 0.036 0.964 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.652 5.652 13 C 0.067 3.933 14 H 0.105 0.895 15 C -0.205 4.205 16 C -0.130 4.130 17 H 0.116 0.884 18 C -0.004 4.004 19 C -0.136 4.136 20 C -0.088 4.088 21 C -0.169 4.169 22 C 0.099 3.901 23 F -0.143 7.143 24 C -0.148 4.148 25 H 0.028 0.972 26 H 0.089 0.911 27 H 0.007 0.993 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 2.570 -15.578 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.280 5.280 13 C -0.045 4.045 14 H 0.123 0.877 15 C -0.244 4.244 16 C -0.150 4.150 17 H 0.134 0.866 18 C -0.004 4.004 19 C -0.154 4.154 20 C -0.106 4.106 21 C -0.187 4.187 22 C 0.080 3.920 23 F -0.122 7.122 24 C -0.167 4.167 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.774 2.751 -15.211 15.912 hybrid contribution -0.331 -0.268 0.618 0.751 sum 3.443 2.483 -14.592 15.197 Atomic orbital electron populations 1.22457 1.00376 0.99280 1.00658 1.19276 0.89797 0.94402 0.85978 0.94641 1.21131 1.30381 1.12569 0.89566 0.91914 1.24941 0.95254 0.95200 0.99066 1.69882 1.37166 1.23197 1.23422 0.86489 0.78481 0.80006 0.82364 1.20726 1.21385 1.19916 1.60406 1.56956 1.08257 1.02423 1.22614 0.98376 0.97538 0.86003 0.87743 1.23597 0.95294 1.02713 1.02782 1.21383 0.91778 0.97932 1.03897 0.86623 1.19082 0.92086 0.94758 0.94505 1.21167 1.00597 0.94819 0.98845 1.20941 0.93532 0.97741 0.98427 1.21062 0.94635 0.99920 1.03120 1.17684 0.76840 0.96981 1.00525 1.91486 1.29678 1.96001 1.95012 1.20987 0.95103 0.98872 1.01757 0.95298 0.89217 0.97430 0.93013 0.84971 0.88921 0.88529 0.85243 0.85224 0.85148 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.94 37.16 0.33 -3.61 16 2 C 0.21 5.24 2.53 -68.86 -0.17 5.06 16 3 H 0.04 0.97 7.57 -51.93 -0.39 0.57 16 4 C -0.50 -13.64 8.84 -34.44 -0.30 -13.94 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.65 -13.42 6.51 -100.96 -0.66 -14.08 16 13 C 0.07 1.16 5.73 -67.72 -0.39 0.77 16 14 H 0.10 1.91 7.60 -51.93 -0.39 1.52 16 15 C -0.21 -2.77 9.56 -26.73 -0.26 -3.03 16 16 C -0.13 -1.91 5.97 -91.77 -0.55 -2.46 16 17 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 18 C 0.00 -0.05 5.61 -104.63 -0.59 -0.64 16 19 C -0.14 -1.65 9.30 -39.58 -0.37 -2.02 16 20 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 21 C -0.17 -1.93 10.03 -39.51 -0.40 -2.33 16 22 C 0.10 1.32 7.30 -39.42 -0.29 1.03 16 23 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 24 C -0.15 -2.06 9.72 -39.51 -0.38 -2.44 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 27 H 0.01 0.14 8.07 -51.93 -0.42 -0.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.39 8.26 -39.29 -0.32 6.06 16 30 H 0.09 1.09 6.18 -51.93 -0.32 0.77 16 31 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 32 H 0.13 1.39 6.02 -52.49 -0.32 1.07 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -28.37 299.24 -8.92 -37.29 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.56 Total: 6.17 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -3.85 Total: -23.50 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.03 Total: -38.90 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.37 -8.92 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378665150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds