Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46877 * 2 1 4 4 C 1.50698 * 109.47421 * 120.00800 * 2 1 3 5 5 H 1.07994 * 120.00160 * 120.00278 * 4 2 1 6 6 C 1.37874 * 119.99810 * 299.99645 * 4 2 1 7 7 N 1.31521 * 120.00170 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47279 * 90.00214 * 8 6 4 10 10 H 1.48500 * 109.47251 * 210.00413 * 8 6 4 11 11 H 1.48501 * 109.46774 * 330.00325 * 8 6 4 12 12 N 1.46905 * 109.46907 * 240.00854 * 2 1 3 13 13 C 1.46895 * 111.00330 * 84.99790 * 12 2 1 14 14 H 1.09003 * 115.55120 * 9.32511 * 13 12 2 15 15 C 1.52996 * 117.52002 * 223.62769 * 13 12 2 16 16 C 1.52998 * 60.00111 * 252.51818 * 15 13 12 17 17 H 1.09000 * 117.52020 * 107.48453 * 16 15 13 18 18 C 1.50699 * 117.49539 * 252.51030 * 16 15 13 19 19 C 1.38270 * 119.99120 * 8.64329 * 18 16 15 20 20 C 1.38221 * 120.05301 * 180.02562 * 19 18 16 21 21 C 1.38217 * 120.02394 * 359.70258 * 20 19 18 22 22 C 1.38442 * 119.97538 * 0.52749 * 21 20 19 23 23 F 1.35104 * 120.02527 * 179.76861 * 22 21 20 24 24 C 1.38176 * 119.98426 * 188.62295 * 18 16 15 25 25 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46835 * 299.99415 * 1 2 3 27 27 H 1.08996 * 109.47145 * 59.99289 * 1 2 3 28 28 H 0.97001 * 120.00244 * 179.97438 * 7 6 4 29 29 H 1.00897 * 111.00304 * 321.04070 * 12 2 1 30 30 H 1.09005 * 117.50152 * 145.02267 * 15 13 12 31 31 H 1.09006 * 117.49897 * 0.02562 * 15 13 12 32 32 H 1.08001 * 119.96959 * 0.02562 * 19 18 16 33 33 H 1.07993 * 119.98770 * 179.97438 * 20 19 18 34 34 H 1.08007 * 120.01392 * 180.27288 * 21 20 19 35 35 H 1.07995 * 120.01616 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.6306 -0.5444 4.4117 10 1 1.3446 -0.9495 5.1121 11 1 2.4882 -2.5657 3.7118 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2228 -2.3469 14 1 1.9216 1.2762 -2.1174 15 6 1.5678 -0.2936 -3.6920 16 6 3.0702 -0.1136 -3.4658 17 1 3.6736 -1.0141 -3.3506 18 6 3.7465 1.0367 -4.1661 19 6 2.9884 1.9837 -4.8297 20 6 3.6074 3.0390 -5.4730 21 6 4.9847 3.1521 -5.4483 22 6 5.7450 2.2019 -4.7882 23 9 7.0916 2.3089 -4.7675 24 6 5.1238 1.1448 -4.1445 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7083 1.1605 3.4845 29 1 1.4496 -1.4978 -1.4103 30 1 1.0684 0.4200 -4.3475 31 1 1.1821 -1.3126 -3.7258 32 1 1.9119 1.8987 -4.8455 33 1 3.0143 3.7779 -5.9913 34 1 5.4679 3.9792 -5.9473 35 1 5.7157 0.4050 -3.6262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378665150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -15.014969 kcal Electronic energy + Delta-G solvation = -17257.823287 eV Core-core repulsion = 14363.001875 eV Total energy + Delta-G solvation = -2894.821412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90473 -40.57181 -38.54672 -36.29006 -33.77636 -31.93725 -31.09252 -28.99973 -27.21619 -24.89603 -23.71302 -22.60441 -22.13619 -21.31750 -18.56473 -18.15217 -17.36265 -17.09096 -16.79349 -16.61052 -16.31289 -15.79662 -14.88846 -14.54686 -14.41976 -14.38096 -13.85017 -13.51836 -13.34669 -13.06270 -12.91165 -12.84915 -12.75611 -12.36548 -12.17390 -11.98799 -11.90777 -11.77496 -11.22796 -10.97803 -10.48754 -9.86963 -9.60482 -8.76882 -8.10436 -6.21574 0.18169 0.25740 1.43037 1.43884 1.54398 2.43316 2.52597 3.06000 3.18040 3.23876 3.47314 3.81152 3.88785 4.08772 4.13504 4.14687 4.27097 4.35291 4.51452 4.75452 4.77236 4.88539 4.94738 5.00063 5.11465 5.14304 5.16237 5.22078 5.39450 5.43463 5.62360 5.69665 5.84214 5.96223 6.27329 6.63327 6.81298 6.93628 7.48446 8.95118 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.004613 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.445539 B = 6067.824993 C = 6580.028547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.219 3.781 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.659 5.659 13 C 0.033 3.967 14 H 0.088 0.912 15 C -0.172 4.172 16 C -0.120 4.120 17 H 0.109 0.891 18 C -0.023 4.023 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.163 4.163 22 C 0.079 3.921 23 F -0.151 7.151 24 C -0.166 4.166 25 H 0.033 0.967 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.337 0.663 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 2.768 -17.134 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.111 3.889 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.288 5.288 13 C -0.078 4.078 14 H 0.106 0.894 15 C -0.210 4.210 16 C -0.140 4.140 17 H 0.127 0.873 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.099 4.099 21 C -0.182 4.182 22 C 0.060 3.940 23 F -0.129 7.129 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.267 2.943 -16.793 17.359 hybrid contribution -0.147 -0.272 1.013 1.059 sum 3.121 2.671 -15.780 16.305 Atomic orbital electron populations 1.22242 0.99434 0.99399 1.00253 1.18977 0.90375 0.92444 0.87093 0.98207 1.21455 1.30509 1.12556 0.91153 0.92798 1.25699 0.95422 0.95882 1.01854 1.70006 1.37922 1.24244 1.24015 0.85528 0.77879 0.79095 0.78927 1.20582 1.20753 1.19286 1.60261 1.57029 1.08852 1.02635 1.22515 1.02585 0.96263 0.86452 0.89361 1.23684 0.94361 1.03678 0.99285 1.21312 0.92589 0.98022 1.02068 0.87310 1.19109 0.92127 0.95384 0.95740 1.21438 1.01418 0.94523 0.98146 1.21357 0.93445 0.97684 0.97462 1.21425 0.95070 0.99716 1.01994 1.17917 0.76781 0.97719 1.01552 1.91462 1.30230 1.96078 1.95168 1.21062 0.95516 0.99422 1.02486 0.94761 0.92104 0.95187 0.92970 0.84336 0.86405 0.87345 0.83579 0.81637 0.82690 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.23 8.94 71.98 0.64 -6.59 16 2 C 0.22 11.05 2.53 44.17 0.11 11.16 16 3 H 0.00 0.00 7.57 -2.39 -0.02 -0.02 16 4 C -0.52 -28.91 8.84 25.60 0.23 -28.68 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.66 -27.35 6.51 -473.32 -3.08 -30.43 16 13 C 0.03 1.14 5.73 44.91 0.26 1.40 16 14 H 0.09 3.28 7.60 -2.39 -0.02 3.26 16 15 C -0.17 -4.23 9.56 30.59 0.29 -3.93 16 16 C -0.12 -3.44 5.97 -11.54 -0.07 -3.51 16 17 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 18 C -0.02 -0.62 5.61 -19.87 -0.11 -0.73 16 19 C -0.14 -2.98 9.30 22.27 0.21 -2.77 16 20 C -0.08 -1.48 10.04 22.26 0.22 -1.26 16 21 C -0.16 -3.34 10.03 22.31 0.22 -3.12 16 22 C 0.08 2.06 7.30 22.38 0.16 2.22 16 23 F -0.15 -4.12 17.27 44.97 0.78 -3.35 16 24 C -0.17 -4.62 9.72 22.31 0.22 -4.40 16 25 H 0.03 1.52 8.13 -2.38 -0.02 1.50 16 26 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 27 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.34 12.87 8.26 -89.70 -0.74 12.13 16 30 H 0.12 2.32 6.18 -2.38 -0.01 2.31 16 31 H 0.11 2.46 8.09 -2.38 -0.02 2.44 16 32 H 0.15 2.61 6.02 -2.91 -0.02 2.60 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -62.03 299.24 3.15 -58.88 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.36 Total: 20.85 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 2.83 Total: -39.22 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.84 Total: -83.36 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.03 3.15 -58.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378665150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.861 kcal (2) G-P(sol) polarization free energy of solvation -62.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds