Wall clock time and date at job start Mon Mar 30 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46901 * 2 1 4 4 C 1.50704 * 109.46705 * 240.00555 * 2 1 3 5 5 H 1.08005 * 119.99254 * 239.99640 * 4 2 1 6 6 C 1.37871 * 120.00448 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99814 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47489 * 89.99911 * 8 6 4 10 10 H 1.48506 * 109.47433 * 209.99952 * 8 6 4 11 11 H 1.48503 * 109.47195 * 330.00066 * 8 6 4 12 12 N 1.46891 * 109.47175 * 120.00556 * 2 1 3 13 13 C 1.46909 * 110.99938 * 274.99953 * 12 2 1 14 14 H 1.09000 * 115.55827 * 9.29405 * 13 12 2 15 15 C 1.53002 * 117.49722 * 223.61072 * 13 12 2 16 16 C 1.53000 * 60.02940 * 252.51823 * 15 13 12 17 17 H 1.09008 * 117.49673 * 107.47884 * 16 15 13 18 18 C 1.50692 * 117.50104 * 252.47218 * 16 15 13 19 19 C 1.38250 * 119.97343 * 8.33977 * 18 16 15 20 20 C 1.38200 * 120.02510 * 179.76475 * 19 18 16 21 21 C 1.38457 * 119.97384 * 0.50847 * 20 19 18 22 22 F 1.35099 * 120.02705 * 179.77321 * 21 20 19 23 23 C 1.38457 * 119.94847 * 359.74196 * 21 20 19 24 24 C 1.38195 * 119.97653 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.46881 * 299.99636 * 1 2 3 26 26 H 1.09006 * 109.46967 * 59.99685 * 1 2 3 27 27 H 1.08993 * 109.46948 * 179.97438 * 1 2 3 28 28 H 0.97003 * 120.00061 * 180.02562 * 7 6 4 29 29 H 1.00895 * 111.00530 * 151.04786 * 12 2 1 30 30 H 1.09002 * 117.49918 * 145.01858 * 15 13 12 31 31 H 1.09002 * 117.49754 * 0.02562 * 15 13 12 32 32 H 1.07992 * 119.98501 * 0.02562 * 19 18 16 33 33 H 1.07997 * 120.01165 * 180.24768 * 20 19 18 34 34 H 1.08004 * 120.01385 * 180.02562 * 23 21 20 35 35 H 1.08007 * 119.98973 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.6229 1.1991 2.1953 15 6 3.3267 0.1574 3.2350 16 6 1.9932 -0.3916 3.7461 17 1 1.8878 -1.4744 3.8147 18 6 1.2767 0.3997 4.8098 19 6 1.7353 1.6550 5.1634 20 6 1.0762 2.3837 6.1352 21 6 -0.0377 1.8516 6.7623 22 9 -0.6802 2.5611 7.7158 23 6 -0.4931 0.5922 6.4110 24 6 0.1648 -0.1327 5.4355 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7081 1.1611 -3.4844 29 1 2.9173 -1.1205 1.0286 30 1 3.6855 1.0912 3.6678 31 1 4.0988 -0.5641 2.9676 32 1 2.6066 2.0681 4.6770 33 1 1.4323 3.3659 6.4085 34 1 -1.3621 0.1763 6.8992 35 1 -0.1900 -1.1153 5.1616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378681370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:56 Heat of formation + Delta-G solvation = -15.754466 kcal Electronic energy + Delta-G solvation = -17217.009138 eV Core-core repulsion = 14322.155659 eV Total energy + Delta-G solvation = -2894.853479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.87621 -40.56755 -38.48470 -36.24878 -33.68705 -32.09500 -31.10615 -29.09199 -27.26923 -24.74731 -23.80826 -22.78109 -21.64970 -21.25646 -18.77449 -18.45172 -17.46336 -17.01268 -16.58481 -16.55353 -15.95439 -15.70265 -15.28578 -14.53195 -14.48178 -14.32489 -13.90739 -13.51880 -13.44147 -13.24218 -12.84156 -12.62109 -12.56039 -12.39843 -12.24185 -12.07164 -11.84214 -11.68420 -11.16475 -10.89079 -10.55301 -10.05253 -9.50616 -8.79690 -8.13142 -6.27819 0.13775 0.29355 1.43656 1.44692 1.54599 2.41513 2.50495 3.12901 3.16709 3.29500 3.39937 3.79369 3.89099 3.98228 4.09875 4.18796 4.34146 4.35108 4.56194 4.75819 4.82978 4.96768 5.01940 5.05770 5.09617 5.16800 5.20068 5.22715 5.34972 5.49232 5.64724 5.68861 5.85477 5.94654 6.20873 6.47043 6.76473 6.99597 7.42945 8.92475 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043746 B = 0.004027 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.902405 B = 6951.629672 C = 7159.313779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.219 3.781 3 H -0.027 1.027 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.656 5.656 13 C 0.029 3.971 14 H 0.085 0.915 15 C -0.182 4.182 16 C -0.106 4.106 17 H 0.117 0.883 18 C -0.060 4.060 19 C -0.100 4.100 20 C -0.151 4.151 21 C 0.069 3.931 22 F -0.149 7.149 23 C -0.151 4.151 24 C -0.091 4.091 25 H 0.018 0.982 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.338 0.662 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 0.332 16.509 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H -0.009 1.009 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.285 5.285 13 C -0.082 4.082 14 H 0.103 0.897 15 C -0.221 4.221 16 C -0.126 4.126 17 H 0.135 0.865 18 C -0.061 4.061 19 C -0.118 4.118 20 C -0.170 4.170 21 C 0.050 3.950 22 F -0.128 7.128 23 C -0.170 4.170 24 C -0.109 4.109 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.937 0.219 16.543 16.571 hybrid contribution 0.613 0.448 -1.015 1.268 sum 1.551 0.667 15.529 15.620 Atomic orbital electron populations 1.21542 0.97915 0.98782 0.98822 1.18916 0.92535 0.90914 0.86549 1.00939 1.21594 1.31832 1.12803 0.91541 0.92015 1.25728 0.95123 0.95613 1.02071 1.70029 1.37425 1.24073 1.24207 0.85481 0.78917 0.78152 0.78608 1.20235 1.20984 1.18989 1.60290 1.31789 1.31756 1.04711 1.22552 1.01801 0.95619 0.88265 0.89670 1.23675 0.90977 1.03819 1.03595 1.21292 0.99289 0.99173 0.92834 0.86533 1.19402 0.95820 0.94757 0.96091 1.21135 1.00294 0.93754 0.96617 1.21317 0.95543 1.02004 0.98144 1.17929 0.94495 0.91817 0.90775 1.91465 1.81034 1.78243 1.62037 1.21329 1.02264 0.93519 0.99866 1.21067 0.94223 1.00873 0.94766 0.96317 0.92501 0.95383 0.92831 0.84302 0.86995 0.87536 0.83747 0.83105 0.83012 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 9.19 71.98 0.66 -5.00 16 2 C 0.22 11.08 2.50 44.17 0.11 11.19 16 3 H -0.03 -1.51 7.73 -2.39 -0.02 -1.52 16 4 C -0.54 -29.22 8.59 25.60 0.22 -29.00 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.62 11.32 21.45 0.24 -52.37 16 8 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.66 -27.02 6.58 -473.17 -3.11 -30.13 16 13 C 0.03 0.99 5.67 44.94 0.25 1.25 16 14 H 0.09 3.20 7.77 -2.39 -0.02 3.19 16 15 C -0.18 -4.65 9.56 30.60 0.29 -4.36 16 16 C -0.11 -2.88 5.97 -11.52 -0.07 -2.95 16 17 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 18 C -0.06 -1.50 5.61 -19.86 -0.11 -1.62 16 19 C -0.10 -2.28 9.30 22.26 0.21 -2.07 16 20 C -0.15 -3.29 10.03 22.31 0.22 -3.07 16 21 C 0.07 1.60 7.30 22.37 0.16 1.77 16 22 F -0.15 -3.58 17.27 44.97 0.78 -2.81 16 23 C -0.15 -3.28 10.03 22.31 0.22 -3.06 16 24 C -0.09 -2.10 9.73 22.26 0.22 -1.88 16 25 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 26 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.34 13.34 8.01 -89.70 -0.72 12.62 16 30 H 0.11 2.40 6.17 -2.39 -0.01 2.39 16 31 H 0.11 2.55 8.09 -2.39 -0.02 2.53 16 32 H 0.14 2.85 6.01 -2.91 -0.02 2.83 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -59.72 299.11 3.15 -56.56 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.38 Total: 21.46 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 2.84 Total: -37.59 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.87 Total: -82.51 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -59.72 3.15 -56.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378681370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.809 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds