Wall clock time and date at job start Mon Mar 30 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48495 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47123 * 300.00167 * 3 2 1 6 6 H 1.48502 * 109.47069 * 60.00203 * 3 2 1 7 7 C 1.37879 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99850 * 191.60068 * 7 2 1 9 9 C 1.50704 * 120.00040 * 11.59934 * 7 2 1 10 10 C 1.53004 * 115.56213 * 39.85061 * 9 7 2 11 11 N 1.46499 * 109.46699 * 90.45735 * 10 9 7 12 12 C 1.37032 * 123.23123 * 95.54843 * 11 10 9 13 13 O 1.21282 * 123.37298 * 359.93638 * 12 11 10 14 14 C 1.52388 * 113.25405 * 179.97438 * 12 11 10 15 15 C 1.53510 * 107.44842 * 301.82887 * 14 12 11 16 16 C 1.52569 * 109.63110 * 54.85640 * 15 14 12 17 17 C 1.47979 * 123.22992 * 275.24792 * 11 10 9 18 18 C 1.56401 * 107.00985 * 121.15984 * 17 11 10 19 19 C 1.53011 * 109.41586 * 58.10190 * 18 17 11 20 20 C 1.53002 * 117.49949 * 254.16535 * 9 7 2 21 21 C 1.52997 * 117.49969 * 185.54403 * 9 7 2 22 22 H 0.96998 * 120.00391 * 354.99624 * 1 2 3 23 23 H 1.08990 * 109.47264 * 210.45719 * 10 9 7 24 24 H 1.09002 * 109.46979 * 330.46309 * 10 9 7 25 25 H 1.09000 * 110.95261 * 180.39453 * 14 12 11 26 26 H 1.08997 * 109.46660 * 175.09056 * 15 14 12 27 27 H 1.09011 * 109.46265 * 295.06216 * 15 14 12 28 28 H 1.08997 * 109.46325 * 240.51420 * 16 15 14 29 29 H 1.09003 * 109.23024 * 120.74576 * 16 15 14 30 30 H 1.09001 * 110.53140 * 0.31764 * 17 11 10 31 31 H 1.09002 * 110.21779 * 297.74529 * 18 17 11 32 32 H 1.09003 * 108.95517 * 177.68656 * 18 17 11 33 33 H 1.08997 * 109.46535 * 238.80499 * 19 18 17 34 34 H 1.08999 * 109.46530 * 118.83143 * 19 18 17 35 35 H 1.09004 * 117.49775 * 359.97438 * 20 9 7 36 36 H 1.08997 * 117.50054 * 145.01486 * 20 9 7 37 37 H 1.09000 * 117.50071 * 214.97704 * 21 9 7 38 38 H 1.09006 * 117.49799 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0680 -1.2035 0.1886 9 6 1.2741 -2.4860 -0.2613 10 6 0.1998 -2.4282 -1.3492 11 7 0.7981 -2.7614 -2.6443 12 6 0.7702 -4.0212 -3.1826 13 8 0.2497 -4.9696 -2.6344 14 6 1.4597 -4.1115 -4.5386 15 6 0.7587 -3.1204 -5.4783 16 6 0.7660 -1.7286 -4.8531 17 6 1.4849 -1.7683 -3.4998 18 6 2.9486 -2.2784 -3.7083 19 6 2.9167 -3.6694 -4.3448 20 6 1.0218 -3.4094 0.9323 21 6 2.0667 -3.7869 -0.1195 22 1 -0.4850 0.8368 0.0733 23 1 -0.5894 -3.1437 -1.1188 24 1 -0.2212 -1.4237 -1.3911 25 1 1.4095 -5.1258 -4.9346 26 1 1.2817 -3.0942 -6.4342 27 1 -0.2722 -3.4373 -5.6369 28 1 -0.2599 -1.3901 -4.7084 29 1 1.2846 -1.0387 -5.5189 30 1 1.4793 -0.7866 -3.0260 31 1 3.4696 -2.3293 -2.7521 32 1 3.4730 -1.5890 -4.3701 33 1 3.4277 -4.3786 -3.6937 34 1 3.4184 -3.6379 -5.3120 35 1 1.3845 -3.0826 1.9069 36 1 0.0905 -3.9756 0.9426 37 1 1.8229 -4.6017 -0.8013 38 1 3.1167 -3.7084 0.1628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379688176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:33 Heat of formation + Delta-G solvation = -34.793369 kcal Electronic energy + Delta-G solvation = -19722.553646 eV Core-core repulsion = 16950.334883 eV Total energy + Delta-G solvation = -2772.218763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81882 -38.51234 -38.06953 -34.33441 -34.23436 -31.74011 -30.90032 -28.22510 -27.31978 -23.86615 -23.37216 -23.02699 -22.40996 -20.94447 -18.45176 -17.70918 -17.60794 -17.39189 -16.63347 -16.57147 -15.84534 -15.39552 -14.88273 -14.36694 -14.24036 -14.11064 -13.69256 -13.40790 -13.21716 -13.02764 -12.99531 -12.87432 -12.58554 -12.34639 -12.24208 -12.14074 -11.72120 -11.54041 -11.35932 -11.04343 -10.92456 -10.68759 -10.48628 -9.98299 -9.31255 -8.10115 -6.19759 1.41655 1.46824 1.57164 1.74045 2.25419 2.42137 2.99174 3.48754 3.63009 3.71561 3.79904 3.84478 4.24189 4.41941 4.44383 4.46882 4.49480 4.54449 4.60946 4.63436 4.76155 4.83816 4.85677 5.05884 5.08895 5.12225 5.12641 5.22050 5.27465 5.31292 5.32981 5.45654 5.47942 5.49853 5.85127 6.00122 6.36523 6.62560 6.79563 7.37347 7.40892 8.92008 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.009969 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.791962 B = 2808.041995 C = 3371.068860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.493 4.493 8 H 0.052 0.948 9 C 0.030 3.970 10 C 0.158 3.842 11 N -0.597 5.597 12 C 0.496 3.504 13 O -0.600 6.600 14 C -0.103 4.103 15 C -0.100 4.100 16 C -0.128 4.128 17 C 0.136 3.864 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.206 4.206 21 C -0.184 4.184 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -0.460 -13.502 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.036 3.964 11 N -0.327 5.327 12 C 0.287 3.713 13 O -0.483 6.483 14 C -0.125 4.125 15 C -0.138 4.138 16 C -0.166 4.166 17 C 0.033 3.967 18 C -0.164 4.164 19 C -0.139 4.139 20 C -0.244 4.244 21 C -0.222 4.222 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.513 -0.755 -13.229 13.998 hybrid contribution -0.044 0.502 1.153 1.259 sum 4.469 -0.253 -12.076 12.879 Atomic orbital electron populations 1.69879 1.07150 1.27726 1.49632 1.25595 0.95430 1.01750 0.93994 0.85606 0.79126 0.79628 0.77940 1.19340 1.19434 1.21290 1.20682 0.93901 0.90054 1.48336 0.93027 1.19459 0.95785 0.88932 0.92986 1.21064 0.92743 1.01479 0.81162 1.49276 1.55366 1.09227 1.18879 1.22530 0.78561 0.81741 0.88485 1.90579 1.49463 1.40381 1.67829 1.22052 0.96641 1.02520 0.91251 1.21532 1.00708 0.92757 0.98805 1.21949 1.00816 0.98636 0.95195 1.22324 0.92046 0.92091 0.90205 1.22489 0.95061 0.97575 1.01296 1.21589 0.93340 0.96033 1.02889 1.22969 0.98659 1.07345 0.95469 1.22659 0.95669 1.00810 1.03032 0.92425 0.96182 0.87228 0.87209 0.86720 0.92258 0.92630 0.87181 0.90222 0.93312 0.87814 0.93061 0.86772 0.90718 0.92175 0.91655 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.43 10.90 21.45 0.23 -48.20 16 2 C 0.03 1.65 5.16 84.65 0.44 2.08 16 3 Si 0.95 40.20 29.56 68.60 2.03 42.23 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.49 -25.95 9.01 25.60 0.23 -25.72 16 8 H 0.05 2.75 7.84 -2.91 -0.02 2.72 16 9 C 0.03 1.52 1.98 -52.93 -0.10 1.42 16 10 C 0.16 7.87 5.61 86.38 0.48 8.35 16 11 N -0.60 -24.75 2.38 -781.60 -1.86 -26.61 16 12 C 0.50 20.11 6.08 87.84 0.53 20.65 16 13 O -0.60 -29.61 16.45 -3.04 -0.05 -29.66 16 14 C -0.10 -2.82 3.59 -10.66 -0.04 -2.86 16 15 C -0.10 -2.13 5.67 30.62 0.17 -1.96 16 16 C -0.13 -3.09 5.84 30.55 0.18 -2.91 16 17 C 0.14 4.49 3.83 45.99 0.18 4.67 16 18 C -0.13 -3.47 6.00 31.78 0.19 -3.28 16 19 C -0.10 -2.38 5.69 30.76 0.18 -2.21 16 20 C -0.21 -10.40 9.88 30.59 0.30 -10.10 16 21 C -0.18 -8.91 9.66 30.59 0.30 -8.62 16 22 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 23 H 0.02 1.07 7.44 -2.39 -0.02 1.05 16 24 H 0.11 5.82 5.28 -2.39 -0.01 5.81 16 25 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.08 3.00 8.09 -2.39 -0.02 2.98 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 3.72 8.14 -2.38 -0.02 3.70 16 36 H 0.06 3.03 8.03 -2.39 -0.02 3.01 16 37 H 0.06 3.26 6.44 -2.39 -0.02 3.24 16 38 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 Total: -1.00 -64.83 299.60 4.41 -60.42 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.03 Total: 22.30 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.03 Total: -20.48 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.63 Total: -74.81 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -64.83 4.41 -60.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379688176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.623 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds