Wall clock time and date at job start Mon Mar 30 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38473 * 120.04351 * 2 1 4 4 F 1.35097 * 120.06081 * 0.02562 * 3 2 1 5 5 C 1.38325 * 119.87640 * 180.02562 * 3 2 1 6 6 C 1.38460 * 120.19976 * 0.02562 * 5 3 2 7 7 C 1.38474 * 119.84073 * 359.97065 * 6 5 3 8 8 C 1.38065 * 120.04346 * 180.02562 * 2 1 3 9 9 C 1.50692 * 119.87469 * 359.97422 * 8 2 1 10 10 H 1.08999 * 109.47679 * 13.69355 * 9 8 2 11 11 N 1.46901 * 109.47042 * 133.69691 * 9 8 2 12 12 C 1.50697 * 109.47217 * 253.69345 * 9 8 2 13 13 H 1.08009 * 119.99917 * 0.02562 * 12 9 8 14 14 C 1.37880 * 120.00550 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99468 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00401 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47347 * 59.99826 * 16 14 12 18 18 H 1.48500 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46938 * 299.99949 * 16 14 12 20 20 C 1.51377 * 109.62483 * 179.97438 * 7 6 5 21 21 C 1.54346 * 105.25493 * 17.23439 * 20 7 6 22 22 C 1.51380 * 130.36848 * 179.97438 * 6 5 3 23 23 H 1.09009 * 109.47166 * 95.60396 * 1 2 3 24 24 H 1.08996 * 109.47360 * 215.60217 * 1 2 3 25 25 H 1.09000 * 109.47133 * 335.60556 * 1 2 3 26 26 H 1.08009 * 119.90342 * 179.97438 * 5 3 2 27 27 H 1.00903 * 110.99744 * 307.02775 * 11 9 8 28 28 H 1.00900 * 111.00593 * 70.98193 * 11 9 8 29 29 H 0.97000 * 120.00101 * 180.02562 * 15 14 12 30 30 H 1.08997 * 110.30309 * 258.26308 * 20 7 6 31 31 H 1.09002 * 110.29884 * 136.20581 * 20 7 6 32 32 H 1.09005 * 110.82118 * 91.81989 * 21 20 7 33 33 H 1.08995 * 110.82008 * 215.17310 * 21 20 7 34 34 H 1.09000 * 110.30098 * 43.90613 * 22 6 5 35 35 H 1.08997 * 110.30185 * 281.75313 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1987 0.0000 4 9 1.5269 2.3699 0.0005 5 6 3.5835 1.1946 -0.0005 6 6 4.2765 -0.0041 -0.0016 7 6 3.5815 -1.2017 -0.0015 8 6 2.1982 -1.1952 -0.0005 9 6 1.4429 -2.4991 -0.0005 10 1 0.3967 -2.3131 -0.2433 11 7 2.0250 -3.4022 -1.0023 12 6 1.5368 -3.1341 1.3629 13 1 2.0881 -2.6422 2.1509 14 6 0.9192 -4.3428 1.6047 15 7 0.2484 -4.9419 0.6451 16 14 1.0350 -5.1295 3.2949 17 1 0.4456 -4.2167 4.3072 18 1 0.2908 -6.4145 3.2950 19 1 2.4603 -5.3823 3.6266 20 6 4.5595 -2.3571 -0.0035 21 6 5.9080 -1.7485 0.4365 22 6 5.7657 -0.2757 -0.0029 23 1 -0.3634 -0.1004 -1.0228 24 1 -0.3634 -0.8355 0.5982 25 1 -0.3633 0.9359 0.4244 26 1 4.1247 2.1294 -0.0010 27 1 2.0787 -2.9544 -1.9050 28 1 2.9319 -3.7324 -0.7081 29 1 -0.1865 -5.7921 0.8152 30 1 4.6440 -2.7795 -1.0047 31 1 4.2415 -3.1230 0.7040 32 1 6.0313 -1.8203 1.5171 33 1 6.7377 -2.2314 -0.0795 34 1 6.2705 0.3808 0.7060 35 1 6.1744 -0.1382 -1.0040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380474960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:36 Heat of formation + Delta-G solvation = -33.198997 kcal Electronic energy + Delta-G solvation = -18556.712113 eV Core-core repulsion = 15661.102182 eV Total energy + Delta-G solvation = -2895.609931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.44510 -39.82776 -35.85782 -34.42254 -31.85051 -30.82780 -28.99867 -27.36657 -26.09137 -25.24972 -22.96089 -20.97587 -19.91167 -19.50481 -16.86348 -16.20240 -15.98299 -15.37292 -15.03660 -14.63019 -14.58231 -13.97902 -13.33110 -13.07227 -12.84899 -12.76164 -12.44681 -12.22450 -11.90946 -11.61743 -11.51507 -11.19016 -10.90524 -10.85421 -10.77542 -10.65735 -10.42112 -10.27911 -9.75473 -9.21613 -8.47336 -7.98278 -7.77512 -7.04141 -5.92674 -4.07967 1.68597 1.81925 3.31535 3.36992 3.39582 4.06263 4.45309 4.53563 4.91462 4.98929 5.24928 5.30346 5.32836 5.43534 5.61861 5.68658 5.87998 5.96948 5.99587 6.11074 6.14885 6.20135 6.27696 6.34603 6.43713 6.53731 6.65314 6.72911 6.79927 6.95948 7.06916 7.51386 7.61016 7.85516 8.12778 8.60430 9.00315 9.11926 9.60360 11.11126 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.008945 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.803297 B = 3129.586276 C = 3893.945735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.085 3.915 4 F -0.148 7.148 5 C -0.163 4.163 6 C -0.089 4.089 7 C -0.093 4.093 8 C -0.039 4.039 9 C 0.251 3.749 10 H 0.055 0.945 11 N -0.812 5.812 12 C -0.533 4.533 13 H 0.053 0.947 14 C 0.084 3.916 15 N -0.845 5.845 16 Si 0.883 3.117 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.075 4.075 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.295 0.705 28 H 0.325 0.675 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 7.850 -2.196 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C 0.066 3.934 4 F -0.127 7.127 5 C -0.182 4.182 6 C -0.089 4.089 7 C -0.094 4.094 8 C -0.042 4.042 9 C 0.142 3.858 10 H 0.073 0.927 11 N -0.339 5.339 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.123 4.123 15 N -0.479 5.479 16 Si 0.710 3.290 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.112 4.112 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.042 7.218 -2.115 10.303 hybrid contribution 0.705 0.676 0.915 1.338 sum 7.747 7.894 -1.200 11.125 Atomic orbital electron populations 1.20705 0.90527 1.03065 1.02454 1.19736 0.96972 0.91066 1.04162 1.17371 0.89731 0.80703 1.05602 1.91405 1.80593 1.46346 1.94341 1.20198 0.91836 0.98054 1.08095 1.20370 0.95771 0.92655 1.00084 1.20355 0.93198 0.94839 1.00964 1.21080 0.92881 0.97927 0.92281 1.18304 0.93435 0.81713 0.92356 0.92721 1.59321 1.29641 1.41946 1.03001 1.20759 1.35661 1.05928 0.94799 0.92864 1.24948 0.94600 0.96870 0.95920 1.70102 1.31122 1.15672 1.30981 0.86840 0.78203 0.78692 0.85238 1.20347 1.21309 1.20301 1.21106 0.91932 0.96792 1.02103 1.22308 0.97576 0.94560 1.01359 1.20976 0.91701 0.97181 1.01385 0.91592 0.89291 0.92391 0.86188 0.89500 0.86123 0.93282 0.90886 0.88761 0.91142 0.90970 0.91263 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 8.93 36.01 0.32 -1.72 16 2 C -0.12 -2.34 5.88 -104.60 -0.62 -2.96 16 3 C 0.09 1.58 7.24 -39.46 -0.29 1.29 16 4 F -0.15 -2.64 16.39 2.25 0.04 -2.60 16 5 C -0.16 -2.76 10.02 -39.47 -0.40 -3.15 16 6 C -0.09 -1.49 6.14 -104.12 -0.64 -2.13 16 7 C -0.09 -1.75 5.74 -104.17 -0.60 -2.35 16 8 C -0.04 -0.82 4.78 -104.66 -0.50 -1.32 16 9 C 0.25 5.97 2.39 -70.02 -0.17 5.80 16 10 H 0.06 1.42 5.98 -51.93 -0.31 1.11 16 11 N -0.81 -18.40 8.35 -6.65 -0.06 -18.46 16 12 C -0.53 -13.97 8.01 -34.44 -0.28 -14.25 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 14 C 0.08 2.25 5.39 -17.82 -0.10 2.15 16 15 N -0.84 -23.72 12.77 55.43 0.71 -23.01 16 16 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.08 -1.36 4.71 -26.85 -0.13 -1.49 16 21 C -0.12 -1.59 7.08 -25.32 -0.18 -1.77 16 22 C -0.08 -0.99 6.77 -26.84 -0.18 -1.17 16 23 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 24 H 0.09 1.78 6.70 -51.93 -0.35 1.44 16 25 H 0.06 0.96 7.49 -51.93 -0.39 0.58 16 26 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.29 6.06 8.94 -39.29 -0.35 5.71 16 28 H 0.32 7.04 5.60 -39.29 -0.22 6.82 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.07 1.13 7.55 -51.93 -0.39 0.73 16 31 H 0.09 1.77 7.15 -51.93 -0.37 1.40 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -28.26 285.68 -8.23 -36.48 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.46 Total: 10.61 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.74 Total: -23.07 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.65 Total: -41.47 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.26 -8.23 -36.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380474960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.285 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds