Wall clock time and date at job start Mon Mar 30 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38473 * 120.04351 * 2 1 4 4 F 1.35097 * 120.06081 * 0.02562 * 3 2 1 5 5 C 1.38325 * 119.87640 * 180.02562 * 3 2 1 6 6 C 1.38460 * 120.19976 * 0.02562 * 5 3 2 7 7 C 1.38474 * 119.84073 * 359.97065 * 6 5 3 8 8 C 1.38065 * 120.04346 * 180.02562 * 2 1 3 9 9 C 1.50692 * 119.87469 * 359.97422 * 8 2 1 10 10 H 1.08999 * 109.47679 * 13.69355 * 9 8 2 11 11 N 1.46901 * 109.47042 * 133.69691 * 9 8 2 12 12 C 1.50697 * 109.47217 * 253.69345 * 9 8 2 13 13 H 1.08009 * 119.99917 * 0.02562 * 12 9 8 14 14 C 1.37880 * 120.00550 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99468 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00401 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47347 * 59.99826 * 16 14 12 18 18 H 1.48500 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46938 * 299.99949 * 16 14 12 20 20 C 1.51377 * 109.62483 * 179.97438 * 7 6 5 21 21 C 1.54346 * 105.25493 * 17.23439 * 20 7 6 22 22 C 1.51380 * 130.36848 * 179.97438 * 6 5 3 23 23 H 1.09009 * 109.47166 * 95.60396 * 1 2 3 24 24 H 1.08996 * 109.47360 * 215.60217 * 1 2 3 25 25 H 1.09000 * 109.47133 * 335.60556 * 1 2 3 26 26 H 1.08009 * 119.90342 * 179.97438 * 5 3 2 27 27 H 1.00903 * 110.99744 * 307.02775 * 11 9 8 28 28 H 1.00900 * 111.00593 * 70.98193 * 11 9 8 29 29 H 0.97000 * 120.00101 * 180.02562 * 15 14 12 30 30 H 1.08997 * 110.30309 * 258.26308 * 20 7 6 31 31 H 1.09002 * 110.29884 * 136.20581 * 20 7 6 32 32 H 1.09005 * 110.82118 * 91.81989 * 21 20 7 33 33 H 1.08995 * 110.82008 * 215.17310 * 21 20 7 34 34 H 1.09000 * 110.30098 * 43.90613 * 22 6 5 35 35 H 1.08997 * 110.30185 * 281.75313 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1987 0.0000 4 9 1.5269 2.3699 0.0005 5 6 3.5835 1.1946 -0.0005 6 6 4.2765 -0.0041 -0.0016 7 6 3.5815 -1.2017 -0.0015 8 6 2.1982 -1.1952 -0.0005 9 6 1.4429 -2.4991 -0.0005 10 1 0.3967 -2.3131 -0.2433 11 7 2.0250 -3.4022 -1.0023 12 6 1.5368 -3.1341 1.3629 13 1 2.0881 -2.6422 2.1509 14 6 0.9192 -4.3428 1.6047 15 7 0.2484 -4.9419 0.6451 16 14 1.0350 -5.1295 3.2949 17 1 0.4456 -4.2167 4.3072 18 1 0.2908 -6.4145 3.2950 19 1 2.4603 -5.3823 3.6266 20 6 4.5595 -2.3571 -0.0035 21 6 5.9080 -1.7485 0.4365 22 6 5.7657 -0.2757 -0.0029 23 1 -0.3634 -0.1004 -1.0228 24 1 -0.3634 -0.8355 0.5982 25 1 -0.3633 0.9359 0.4244 26 1 4.1247 2.1294 -0.0010 27 1 2.0787 -2.9544 -1.9050 28 1 2.9319 -3.7324 -0.7081 29 1 -0.1865 -5.7921 0.8152 30 1 4.6440 -2.7795 -1.0047 31 1 4.2415 -3.1230 0.7040 32 1 6.0313 -1.8203 1.5171 33 1 6.7377 -2.2314 -0.0795 34 1 6.2705 0.3808 0.7060 35 1 6.1744 -0.1382 -1.0040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380474960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:36 Heat of formation + Delta-G solvation = -49.144437 kcal Electronic energy + Delta-G solvation = -18557.403559 eV Core-core repulsion = 15661.102182 eV Total energy + Delta-G solvation = -2896.301377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86051 -41.21736 -37.27956 -36.07794 -33.74122 -32.32614 -30.44508 -28.75876 -27.87538 -26.74469 -24.59226 -22.36701 -21.27858 -20.97143 -18.68510 -17.67136 -17.57860 -16.72648 -16.53904 -16.29835 -15.94557 -15.74863 -14.82906 -14.67435 -14.37244 -14.17171 -14.03836 -13.63848 -13.27884 -13.04953 -12.98654 -12.81884 -12.61771 -12.53493 -12.23524 -12.11313 -11.92497 -11.54135 -11.40627 -11.14176 -10.54238 -9.51802 -9.16980 -8.80607 -7.98605 -6.18937 0.25834 0.38135 1.42701 1.43857 1.50767 2.43980 2.66131 3.20648 3.26262 3.62613 3.72023 3.93596 4.18010 4.23067 4.25922 4.36158 4.53743 4.62658 4.70290 4.72184 4.81145 4.92475 4.97811 5.00330 5.12167 5.24444 5.28120 5.32031 5.39936 5.44043 5.58847 5.73436 5.91716 6.05740 6.19591 6.66113 7.11869 7.30055 7.52260 9.04461 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.008945 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.803297 B = 3129.586276 C = 3893.945735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C 0.077 3.923 4 F -0.145 7.145 5 C -0.156 4.156 6 C -0.085 4.085 7 C -0.109 4.109 8 C -0.066 4.066 9 C 0.259 3.741 10 H 0.023 0.977 11 N -0.821 5.821 12 C -0.536 4.536 13 H 0.041 0.959 14 C 0.039 3.961 15 N -0.876 5.876 16 Si 0.941 3.059 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.083 4.083 21 C -0.113 4.113 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.306 0.694 28 H 0.330 0.670 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 9.030 -2.022 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C 0.058 3.942 4 F -0.124 7.124 5 C -0.174 4.174 6 C -0.085 4.085 7 C -0.110 4.110 8 C -0.068 4.068 9 C 0.150 3.850 10 H 0.041 0.959 11 N -0.349 5.349 12 C -0.575 4.575 13 H 0.059 0.941 14 C -0.165 4.165 15 N -0.512 5.512 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.106 4.106 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.518 8.408 -1.934 12.846 hybrid contribution -0.050 0.374 0.830 0.911 sum 9.468 8.782 -1.105 12.961 Atomic orbital electron populations 1.20622 0.90390 1.02609 1.02505 1.19880 0.97457 0.91647 1.05057 1.17456 0.90562 0.80257 1.05975 1.91408 1.80722 1.45902 1.94353 1.20570 0.91166 0.99572 1.06131 1.20855 0.97926 0.91589 0.98139 1.20678 0.92670 0.96943 1.00691 1.20816 0.94030 0.96802 0.95183 1.17918 0.92396 0.83373 0.91361 0.95900 1.59147 1.29984 1.42334 1.03441 1.20956 1.34856 1.05930 0.95771 0.94073 1.25602 0.94442 0.97465 0.99035 1.70220 1.32265 1.15975 1.32748 0.85910 0.78363 0.77713 0.81311 1.20349 1.21057 1.19557 1.21129 0.93450 0.95607 1.01875 1.22331 0.96250 0.94713 1.01704 1.21081 0.88909 0.97174 1.03454 0.90910 0.91930 0.90913 0.82984 0.88307 0.85557 0.93502 0.90069 0.91779 0.91233 0.87964 0.88910 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 8.93 71.24 0.64 -3.34 16 2 C -0.14 -5.58 5.88 -19.85 -0.12 -5.69 16 3 C 0.08 2.74 7.24 22.35 0.16 2.90 16 4 F -0.15 -4.95 16.39 44.97 0.74 -4.21 16 5 C -0.16 -4.81 10.02 22.34 0.22 -4.59 16 6 C -0.08 -2.61 6.14 -19.54 -0.12 -2.73 16 7 C -0.11 -4.02 5.74 -19.57 -0.11 -4.13 16 8 C -0.07 -2.80 4.78 -19.89 -0.10 -2.90 16 9 C 0.26 12.78 2.39 43.42 0.10 12.88 16 10 H 0.02 1.27 5.98 -2.39 -0.01 1.25 16 11 N -0.82 -38.17 8.35 -174.97 -1.46 -39.63 16 12 C -0.54 -28.99 8.01 25.60 0.20 -28.79 16 13 H 0.04 2.27 7.74 -2.91 -0.02 2.24 16 14 C 0.04 2.11 5.39 84.66 0.46 2.57 16 15 N -0.88 -50.52 12.77 21.45 0.27 -50.25 16 16 Si 0.94 43.30 29.54 68.60 2.03 45.32 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.08 -2.66 4.71 30.52 0.14 -2.51 16 21 C -0.11 -2.59 7.08 31.51 0.22 -2.36 16 22 C -0.07 -1.51 6.77 30.52 0.21 -1.30 16 23 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 24 H 0.06 2.67 6.70 -2.39 -0.02 2.66 16 25 H 0.07 2.46 7.49 -2.39 -0.02 2.44 16 26 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.31 12.86 8.94 -89.69 -0.80 12.06 16 28 H 0.33 14.58 5.60 -89.69 -0.50 14.08 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.08 2.40 7.55 -2.39 -0.02 2.38 16 31 H 0.06 2.42 7.15 -2.39 -0.02 2.40 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.72 285.68 3.31 -58.40 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.18 Total: 30.36 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 1.92 Total: -40.00 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.19 Total: -89.88 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.74 Total: -4.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.72 3.31 -58.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380474960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds