Wall clock time and date at job start Mon Mar 30 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46876 * 2 1 4 4 C 1.50704 * 109.46568 * 239.99819 * 2 1 3 5 5 H 1.07993 * 119.99937 * 274.99798 * 4 2 1 6 6 C 1.37880 * 119.99578 * 95.00736 * 4 2 1 7 7 N 1.31515 * 119.99502 * 184.91166 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 4.91026 * 6 4 2 9 9 H 1.48497 * 109.47520 * 84.83480 * 8 6 4 10 10 H 1.48505 * 109.46860 * 204.83595 * 8 6 4 11 11 H 1.48501 * 109.47024 * 324.83134 * 8 6 4 12 12 N 1.46903 * 109.46814 * 120.00293 * 2 1 3 13 13 C 1.46895 * 110.99575 * 274.99630 * 12 2 1 14 14 H 1.09003 * 115.56555 * 350.70330 * 13 12 2 15 15 C 1.53000 * 117.50066 * 136.39592 * 13 12 2 16 16 C 1.52993 * 60.03510 * 107.49840 * 15 13 12 17 17 H 1.09003 * 117.50136 * 107.47395 * 16 15 13 18 18 C 1.50702 * 117.50260 * 252.47978 * 16 15 13 19 19 C 1.38217 * 120.01234 * 8.60718 * 18 16 15 20 20 C 1.38223 * 120.02914 * 179.97438 * 19 18 16 21 21 C 1.38268 * 120.04845 * 0.02562 * 20 19 18 22 22 C 1.38183 * 120.02563 * 0.02562 * 21 20 19 23 23 C 1.38436 * 120.01489 * 188.33115 * 18 16 15 24 24 F 1.35108 * 120.02553 * 359.97438 * 23 18 16 25 25 H 1.08997 * 109.47294 * 175.04319 * 1 2 3 26 26 H 1.08999 * 109.47147 * 295.04439 * 1 2 3 27 27 H 1.09004 * 109.47277 * 55.04224 * 1 2 3 28 28 H 0.97005 * 119.99631 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99652 * 151.04255 * 12 2 1 30 30 H 1.09004 * 117.49736 * 359.97438 * 15 13 12 31 31 H 1.09001 * 117.50377 * 215.00570 * 15 13 12 32 32 H 1.08005 * 119.98438 * 359.95375 * 19 18 16 33 33 H 1.07995 * 119.97542 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.99005 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.00919 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3468 14 1 1.9213 1.2759 2.1177 15 6 1.5682 -0.2946 3.6919 16 6 3.0707 -0.1140 3.4664 17 1 3.5592 0.7182 3.9733 18 6 3.9052 -1.3588 3.3081 19 6 3.2920 -2.5919 3.1903 20 6 4.0571 -3.7338 3.0445 21 6 5.4365 -3.6441 3.0169 22 6 6.0519 -2.4125 3.1355 23 6 5.2861 -1.2671 3.2748 24 9 5.8865 -0.0617 3.3837 25 1 -0.3634 -1.0238 -0.0888 26 1 -0.3633 0.4350 0.9310 27 1 -0.3634 0.5888 -0.8423 28 1 2.9362 -0.1049 -4.2556 29 1 2.9172 -1.1206 1.0287 30 1 1.1829 -1.3137 3.7253 31 1 1.0683 0.4185 4.3474 32 1 2.2145 -2.6632 3.2125 33 1 3.5770 -4.6968 2.9530 34 1 6.0334 -4.5369 2.9033 35 1 7.1294 -2.3428 3.1143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381433364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:03 Heat of formation + Delta-G solvation = 2.383215 kcal Electronic energy + Delta-G solvation = -18017.715657 eV Core-core repulsion = 15123.648687 eV Total energy + Delta-G solvation = -2894.066970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.68011 -39.40263 -37.20109 -34.53053 -31.90524 -30.48237 -30.22068 -28.14471 -25.18643 -23.94015 -22.45262 -21.08915 -20.19335 -19.62990 -17.50647 -16.95219 -16.31832 -15.69786 -15.49130 -15.08135 -14.59620 -13.98354 -13.93019 -13.65489 -13.00928 -12.81898 -12.50950 -12.26931 -12.10434 -11.88825 -11.28690 -11.10996 -11.00687 -10.95667 -10.66950 -10.56891 -10.18557 -10.07807 -9.76379 -9.02810 -8.70534 -8.60740 -8.35148 -7.40238 -6.13259 -4.14027 1.30382 1.38840 3.24420 3.32979 3.34361 3.66879 4.27403 4.36420 4.45287 4.64128 4.87303 4.90249 5.10764 5.20594 5.26846 5.37546 5.48360 5.52919 5.76370 5.99175 6.00647 6.07366 6.24476 6.30611 6.32648 6.40327 6.56745 6.64564 6.69141 6.81965 6.90607 7.05981 7.39878 7.59969 7.94713 8.33828 8.62080 8.95592 9.50667 10.99729 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.007023 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.193239 B = 3985.695381 C = 4242.965208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.180 3.820 3 H 0.006 0.994 4 C -0.519 4.519 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.650 5.650 13 C 0.048 3.952 14 H 0.095 0.905 15 C -0.166 4.166 16 C -0.146 4.146 17 H 0.108 0.892 18 C -0.075 4.075 19 C -0.073 4.073 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.157 4.157 23 C 0.098 3.902 24 F -0.142 7.142 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.345 0.655 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -2.273 14.975 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.282 5.282 13 C -0.064 4.064 14 H 0.112 0.888 15 C -0.204 4.204 16 C -0.165 4.165 17 H 0.126 0.874 18 C -0.076 4.076 19 C -0.091 4.091 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.176 4.176 23 C 0.079 3.921 24 F -0.120 7.120 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.167 0.833 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.241 -2.456 14.903 15.270 hybrid contribution 0.990 1.804 -0.388 2.094 sum 3.230 -0.652 14.516 14.885 Atomic orbital electron populations 1.21825 0.97883 1.00680 0.97812 1.19641 0.92552 0.92503 0.88062 0.97652 1.21056 1.43793 0.95874 0.95047 0.90258 1.25018 0.94324 0.98170 0.95345 1.69900 1.45909 1.35797 1.01634 0.86906 0.79030 0.86624 0.77271 1.20301 1.21346 1.18966 1.60521 1.32502 1.30705 1.04515 1.22705 0.99404 0.96178 0.88077 0.88774 1.23274 0.93478 1.03073 1.00592 1.21328 0.91435 0.96874 1.06874 0.87379 1.19093 0.91130 0.95160 1.02257 1.21043 1.00941 0.90619 0.96504 1.21188 0.93763 0.98847 1.00761 1.20949 0.94912 0.96760 0.99094 1.21046 1.00268 0.91771 1.04488 1.17527 0.90471 0.80530 1.03577 1.91463 1.83788 1.43243 1.93543 0.93030 0.95880 0.94132 0.92552 0.83315 0.88058 0.89019 0.84339 0.85478 0.85424 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.42 37.16 0.35 -2.34 16 2 C 0.18 4.26 2.22 -68.86 -0.15 4.10 16 3 H 0.01 0.14 4.72 -51.93 -0.25 -0.10 16 4 C -0.52 -14.45 8.84 -34.44 -0.30 -14.75 16 5 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 8 Si 0.87 21.60 26.99 -169.99 -4.59 17.01 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.28 6.82 56.52 0.39 -5.89 16 12 N -0.65 -13.30 5.91 -100.91 -0.60 -13.90 16 13 C 0.05 0.83 5.94 -67.68 -0.40 0.43 16 14 H 0.09 1.66 7.60 -51.93 -0.39 1.26 16 15 C -0.17 -2.33 9.78 -26.73 -0.26 -2.59 16 16 C -0.15 -2.22 5.79 -91.73 -0.53 -2.75 16 17 H 0.11 1.57 7.87 -51.93 -0.41 1.16 16 18 C -0.08 -1.16 4.62 -104.56 -0.48 -1.64 16 19 C -0.07 -1.04 8.26 -39.59 -0.33 -1.37 16 20 C -0.13 -1.61 10.04 -39.58 -0.40 -2.00 16 21 C -0.10 -1.19 10.04 -39.59 -0.40 -1.59 16 22 C -0.16 -2.09 10.03 -39.51 -0.40 -2.49 16 23 C 0.10 1.52 7.25 -39.42 -0.29 1.23 16 24 F -0.14 -2.31 16.62 2.25 0.04 -2.27 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.35 7.47 6.78 -39.29 -0.27 7.21 16 30 H 0.10 1.39 6.18 -51.93 -0.32 1.07 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.14 1.90 6.02 -52.48 -0.32 1.59 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -29.74 294.36 -8.10 -37.84 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.48 Total: 6.97 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -3.69 Total: -23.72 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.18 Total: -40.27 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.74 -8.10 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.221 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds