Wall clock time and date at job start Mon Mar 30 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46876 * 2 1 4 4 C 1.50704 * 109.46568 * 239.99819 * 2 1 3 5 5 H 1.07993 * 119.99937 * 274.99798 * 4 2 1 6 6 C 1.37880 * 119.99578 * 95.00736 * 4 2 1 7 7 N 1.31515 * 119.99502 * 184.91166 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 4.91026 * 6 4 2 9 9 H 1.48497 * 109.47520 * 84.83480 * 8 6 4 10 10 H 1.48505 * 109.46860 * 204.83595 * 8 6 4 11 11 H 1.48501 * 109.47024 * 324.83134 * 8 6 4 12 12 N 1.46903 * 109.46814 * 120.00293 * 2 1 3 13 13 C 1.46895 * 110.99575 * 274.99630 * 12 2 1 14 14 H 1.09003 * 115.56555 * 350.70330 * 13 12 2 15 15 C 1.53000 * 117.50066 * 136.39592 * 13 12 2 16 16 C 1.52993 * 60.03510 * 107.49840 * 15 13 12 17 17 H 1.09003 * 117.50136 * 107.47395 * 16 15 13 18 18 C 1.50702 * 117.50260 * 252.47978 * 16 15 13 19 19 C 1.38217 * 120.01234 * 8.60718 * 18 16 15 20 20 C 1.38223 * 120.02914 * 179.97438 * 19 18 16 21 21 C 1.38268 * 120.04845 * 0.02562 * 20 19 18 22 22 C 1.38183 * 120.02563 * 0.02562 * 21 20 19 23 23 C 1.38436 * 120.01489 * 188.33115 * 18 16 15 24 24 F 1.35108 * 120.02553 * 359.97438 * 23 18 16 25 25 H 1.08997 * 109.47294 * 175.04319 * 1 2 3 26 26 H 1.08999 * 109.47147 * 295.04439 * 1 2 3 27 27 H 1.09004 * 109.47277 * 55.04224 * 1 2 3 28 28 H 0.97005 * 119.99631 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99652 * 151.04255 * 12 2 1 30 30 H 1.09004 * 117.49736 * 359.97438 * 15 13 12 31 31 H 1.09001 * 117.50377 * 215.00570 * 15 13 12 32 32 H 1.08005 * 119.98438 * 359.95375 * 19 18 16 33 33 H 1.07995 * 119.97542 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.99005 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.00919 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3468 14 1 1.9213 1.2759 2.1177 15 6 1.5682 -0.2946 3.6919 16 6 3.0707 -0.1140 3.4664 17 1 3.5592 0.7182 3.9733 18 6 3.9052 -1.3588 3.3081 19 6 3.2920 -2.5919 3.1903 20 6 4.0571 -3.7338 3.0445 21 6 5.4365 -3.6441 3.0169 22 6 6.0519 -2.4125 3.1355 23 6 5.2861 -1.2671 3.2748 24 9 5.8865 -0.0617 3.3837 25 1 -0.3634 -1.0238 -0.0888 26 1 -0.3633 0.4350 0.9310 27 1 -0.3634 0.5888 -0.8423 28 1 2.9362 -0.1049 -4.2556 29 1 2.9172 -1.1206 1.0287 30 1 1.1829 -1.3137 3.7253 31 1 1.0683 0.4185 4.3474 32 1 2.2145 -2.6632 3.2125 33 1 3.5770 -4.6968 2.9530 34 1 6.0334 -4.5369 2.9033 35 1 7.1294 -2.3428 3.1143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381433364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:03 Heat of formation + Delta-G solvation = -15.072561 kcal Electronic energy + Delta-G solvation = -18018.472597 eV Core-core repulsion = 15123.648687 eV Total energy + Delta-G solvation = -2894.823909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.86534 -40.54076 -38.47872 -36.25580 -33.94196 -31.58407 -31.30915 -29.79325 -27.24621 -25.02488 -23.54699 -22.49650 -21.64561 -21.09057 -19.09773 -18.53716 -17.52441 -16.98552 -16.83345 -16.54042 -15.85783 -15.51821 -15.36414 -15.02298 -14.61922 -14.16235 -14.07486 -13.89295 -13.33892 -13.09263 -12.88609 -12.74883 -12.58283 -12.42699 -12.17570 -11.91799 -11.86070 -11.56326 -11.41721 -11.00070 -10.74391 -9.77734 -9.48962 -8.95811 -8.33650 -6.38440 0.23006 0.33811 1.29188 1.30706 1.41045 2.28887 2.59485 2.97288 3.10975 3.32768 3.39973 3.68222 3.82233 4.07903 4.14836 4.20946 4.39586 4.44891 4.51072 4.56031 4.72654 4.91795 4.94717 5.00413 5.03119 5.13717 5.18793 5.24449 5.29468 5.50581 5.52316 5.58447 5.69762 6.02258 6.04856 6.48731 6.67095 6.79427 7.30424 8.82977 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.007023 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.193239 B = 3985.695381 C = 4242.965208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.183 3.817 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.038 0.962 6 C 0.017 3.983 7 N -0.942 5.942 8 Si 0.937 3.063 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.245 1.245 12 N -0.646 5.646 13 C 0.016 3.984 14 H 0.093 0.907 15 C -0.137 4.137 16 C -0.141 4.141 17 H 0.113 0.887 18 C -0.094 4.094 19 C -0.084 4.084 20 C -0.130 4.130 21 C -0.096 4.096 22 C -0.162 4.162 23 C 0.070 3.930 24 F -0.153 7.153 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.334 0.666 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -1.853 16.719 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.056 0.944 6 C -0.181 4.181 7 N -0.582 5.582 8 Si 0.762 3.238 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.169 1.169 12 N -0.277 5.277 13 C -0.095 4.095 14 H 0.111 0.889 15 C -0.175 4.175 16 C -0.160 4.160 17 H 0.131 0.869 18 C -0.095 4.095 19 C -0.102 4.102 20 C -0.148 4.148 21 C -0.114 4.114 22 C -0.180 4.180 23 C 0.051 3.949 24 F -0.132 7.132 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.836 -2.034 16.683 16.906 hybrid contribution 1.156 1.528 -0.877 2.107 sum 2.992 -0.506 15.805 16.094 Atomic orbital electron populations 1.21705 0.96259 1.00465 0.99099 1.19532 0.93727 0.91781 0.87552 0.98026 1.21277 1.43268 0.94260 0.97026 0.94399 1.25845 0.94201 1.03185 0.94879 1.70041 1.47829 1.37811 1.02538 0.85890 0.79665 0.80571 0.77723 1.19997 1.20937 1.16875 1.60464 1.31861 1.31139 1.04220 1.22752 1.03011 0.95668 0.88063 0.88915 1.23354 0.92651 1.03787 0.97704 1.21354 0.92260 0.97117 1.05269 0.86868 1.19235 0.91316 0.95685 1.03293 1.21179 1.01249 0.90870 0.96917 1.21565 0.94225 0.99439 0.99533 1.21366 0.95078 0.97436 0.97473 1.21376 1.01297 0.91615 1.03747 1.17878 0.91002 0.80855 1.05195 1.91425 1.83945 1.43967 1.93831 0.93735 0.93001 0.94630 0.92446 0.84649 0.87596 0.86310 0.84190 0.83075 0.82188 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.42 71.98 0.68 -4.23 16 2 C 0.18 8.52 2.22 44.17 0.10 8.62 16 3 H 0.00 0.10 4.72 -2.39 -0.01 0.09 16 4 C -0.52 -29.53 8.84 25.60 0.23 -29.30 16 5 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 6 C 0.02 1.00 5.47 84.66 0.46 1.46 16 7 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 8 Si 0.94 44.48 26.99 68.60 1.85 46.33 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.25 -10.77 6.82 99.48 0.68 -10.09 16 12 N -0.65 -26.11 5.91 -473.17 -2.80 -28.91 16 13 C 0.02 0.54 5.94 44.94 0.27 0.80 16 14 H 0.09 3.09 7.60 -2.39 -0.02 3.08 16 15 C -0.14 -3.48 9.78 30.59 0.30 -3.18 16 16 C -0.14 -4.09 5.79 -11.52 -0.07 -4.16 16 17 H 0.11 3.13 7.87 -2.39 -0.02 3.11 16 18 C -0.09 -2.83 4.62 -19.82 -0.09 -2.92 16 19 C -0.08 -2.29 8.26 22.26 0.18 -2.11 16 20 C -0.13 -3.02 10.04 22.27 0.22 -2.79 16 21 C -0.10 -2.09 10.04 22.26 0.22 -1.87 16 22 C -0.16 -4.09 10.03 22.31 0.22 -3.87 16 23 C 0.07 2.13 7.25 22.37 0.16 2.29 16 24 F -0.15 -4.97 16.62 44.97 0.75 -4.22 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.86 7.99 -2.39 -0.02 1.84 16 27 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.33 14.62 6.78 -89.69 -0.61 14.01 16 30 H 0.11 2.62 6.18 -2.38 -0.01 2.60 16 31 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.14 3.67 6.02 -2.91 -0.02 3.65 16 33 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -65.13 294.36 3.45 -61.68 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.46 Total: 24.71 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 2.89 Total: -41.26 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.50 Total: -87.24 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.75 Total: -4.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.85 Total: 46.33 kcal Total: -65.13 3.45 -61.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.608 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds