Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46788 * 2 1 4 4 C 1.50703 * 109.46985 * 240.00561 * 2 1 3 5 5 H 1.07996 * 119.99834 * 245.46042 * 4 2 1 6 6 C 1.37877 * 120.00458 * 65.45946 * 4 2 1 7 7 N 1.31519 * 119.99475 * 9.54517 * 6 4 2 8 8 Si 1.86791 * 120.00268 * 189.54438 * 6 4 2 9 9 H 1.48495 * 109.47363 * 84.99287 * 8 6 4 10 10 H 1.48503 * 109.47462 * 204.99519 * 8 6 4 11 11 H 1.48503 * 109.47250 * 324.99332 * 8 6 4 12 12 N 1.46896 * 109.47381 * 120.00291 * 2 1 3 13 13 C 1.46898 * 110.99897 * 275.00133 * 12 2 1 14 14 H 1.09001 * 115.56276 * 9.31315 * 13 12 2 15 15 C 1.53000 * 117.50010 * 223.61958 * 13 12 2 16 16 C 1.52999 * 60.00118 * 252.51210 * 15 13 12 17 17 H 1.08994 * 117.49839 * 252.48440 * 16 15 13 18 18 C 1.50700 * 117.50138 * 107.48995 * 16 15 13 19 19 C 1.38218 * 120.01102 * 351.11199 * 18 16 15 20 20 C 1.38224 * 120.02567 * 179.71918 * 19 18 16 21 21 C 1.38274 * 120.04950 * 0.56011 * 20 19 18 22 22 C 1.38173 * 120.02350 * 359.72207 * 21 20 19 23 23 C 1.38432 * 120.01446 * 171.39337 * 18 16 15 24 24 F 1.35105 * 120.02766 * 359.97438 * 23 18 16 25 25 H 1.09007 * 109.47375 * 63.69374 * 1 2 3 26 26 H 1.09003 * 109.47329 * 183.68851 * 1 2 3 27 27 H 1.08999 * 109.47086 * 303.69038 * 1 2 3 28 28 H 0.97004 * 119.99316 * 180.02562 * 7 6 4 29 29 H 1.00895 * 110.99921 * 151.04552 * 12 2 1 30 30 H 1.08997 * 117.50131 * 145.01908 * 15 13 12 31 31 H 1.09002 * 117.51726 * 359.97438 * 15 13 12 32 32 H 1.07998 * 119.98922 * 0.02562 * 19 18 16 33 33 H 1.07999 * 119.97879 * 180.30470 * 20 19 18 34 34 H 1.07994 * 119.98980 * 179.74467 * 21 20 19 35 35 H 1.08005 * 120.01387 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2990 1.0357 -2.5935 8 14 2.1763 -1.1776 -4.0102 9 1 1.0246 -2.0608 -4.3244 10 1 2.4229 -0.2609 -5.1522 11 1 3.3849 -2.0066 -3.7711 12 7 2.0197 -0.6925 1.1993 13 6 2.0824 0.2225 2.3468 14 1 1.6225 1.1990 2.1954 15 6 3.3267 0.1577 3.2349 16 6 1.9930 -0.3912 3.7455 17 1 1.4744 0.1813 4.5145 18 6 1.8471 -1.8881 3.8405 19 6 2.8184 -2.7127 3.3047 20 6 2.6878 -4.0857 3.3968 21 6 1.5800 -4.6360 4.0148 22 6 0.6049 -3.8136 4.5460 23 6 0.7376 -2.4379 4.4593 24 9 -0.2150 -1.6329 4.9789 25 1 -0.3634 0.4554 -0.9213 26 1 -0.3634 -1.0255 0.0661 27 1 -0.3633 0.5700 0.8551 28 1 1.1314 1.4106 -3.4723 29 1 2.9173 -1.1205 1.0286 30 1 3.6854 1.0916 3.6676 31 1 4.0987 -0.5641 2.9682 32 1 3.6821 -2.2841 2.8183 33 1 3.4496 -4.7293 2.9823 34 1 1.4769 -5.7089 4.0825 35 1 -0.2602 -4.2436 5.0289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381433365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = 1.288633 kcal Electronic energy + Delta-G solvation = -17908.645182 eV Core-core repulsion = 15014.530748 eV Total energy + Delta-G solvation = -2894.114435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.58323 -39.28540 -37.16056 -34.46284 -31.76674 -30.38153 -30.10094 -27.59832 -25.13945 -23.85932 -22.38352 -21.27260 -20.24628 -19.58874 -17.37144 -16.56382 -16.19898 -15.62445 -15.29908 -15.00631 -14.37635 -14.15031 -13.94096 -13.39651 -12.92304 -12.67631 -12.50642 -12.22169 -11.92939 -11.56218 -11.14706 -11.00146 -10.93040 -10.77399 -10.64031 -10.40753 -10.24263 -10.14276 -9.72939 -8.93811 -8.63696 -8.48186 -8.21108 -7.19424 -6.08646 -4.10866 1.41963 1.46681 3.29053 3.35436 3.37578 3.75066 4.31190 4.38313 4.56109 4.80852 4.91682 5.03774 5.14278 5.25475 5.28804 5.40300 5.53902 5.59773 5.79131 5.99906 6.10148 6.17281 6.31215 6.32091 6.39439 6.59395 6.72633 6.82212 7.10897 7.14007 7.15868 7.40279 7.75743 7.81975 8.12512 8.30702 8.61307 8.99091 9.54065 11.00632 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.006015 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.982124 B = 4654.251158 C = 5011.610211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.212 3.788 3 H 0.012 0.988 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.651 5.651 13 C 0.064 3.936 14 H 0.108 0.892 15 C -0.204 4.204 16 C -0.132 4.132 17 H 0.108 0.892 18 C -0.045 4.045 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.155 4.155 23 C 0.095 3.905 24 F -0.143 7.143 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.335 0.665 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -6.509 13.013 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 H 0.030 0.970 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.281 5.281 13 C -0.049 4.049 14 H 0.125 0.875 15 C -0.243 4.243 16 C -0.152 4.152 17 H 0.126 0.874 18 C -0.046 4.046 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.125 4.125 22 C -0.174 4.174 23 C 0.076 3.924 24 F -0.122 7.122 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.769 -6.588 13.006 14.687 hybrid contribution 0.607 0.155 -1.012 1.190 sum 2.376 -6.434 11.994 13.817 Atomic orbital electron populations 1.21648 0.98162 0.98895 0.98970 1.19162 0.92185 0.92992 0.85181 0.97002 1.21184 1.36142 1.08191 0.90578 0.92211 1.24903 0.95178 0.94598 0.99030 1.69973 1.44769 1.13941 1.23887 0.86593 0.78752 0.80053 0.82483 1.20496 1.21353 1.19969 1.60375 1.31394 1.30998 1.05308 1.22613 0.97848 0.96128 0.88270 0.87474 1.23565 0.91517 1.02604 1.06589 1.21291 1.01914 0.91307 1.00661 0.87431 1.18990 0.93503 0.94567 0.97566 1.20840 0.98518 0.92893 0.97472 1.21117 0.98374 0.95045 0.99928 1.20860 0.93859 0.99430 0.98352 1.21005 1.01085 0.91567 1.03776 1.17461 0.87453 0.88057 0.99411 1.91451 1.62618 1.73405 1.84677 0.91854 0.94762 0.97191 0.92856 0.84565 0.88842 0.88559 0.85429 0.85798 0.85697 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.28 37.16 0.34 -2.59 16 2 C 0.21 5.29 2.36 -68.87 -0.16 5.13 16 3 H 0.01 0.33 7.68 -51.93 -0.40 -0.07 16 4 C -0.52 -14.15 8.48 -34.44 -0.29 -14.45 16 5 H 0.06 1.60 7.69 -52.49 -0.40 1.19 16 6 C 0.07 1.80 5.17 -17.82 -0.09 1.71 16 7 N -0.89 -25.37 12.16 55.43 0.67 -24.70 16 8 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 12 N -0.65 -13.58 5.43 -100.96 -0.55 -14.13 16 13 C 0.06 1.15 6.02 -67.71 -0.41 0.74 16 14 H 0.11 1.99 7.77 -51.93 -0.40 1.59 16 15 C -0.20 -2.95 9.56 -26.73 -0.26 -3.20 16 16 C -0.13 -2.08 5.80 -91.77 -0.53 -2.61 16 17 H 0.11 1.62 7.87 -51.93 -0.41 1.21 16 18 C -0.05 -0.72 5.26 -104.56 -0.55 -1.27 16 19 C -0.08 -1.15 8.41 -39.59 -0.33 -1.48 16 20 C -0.13 -1.62 10.04 -39.57 -0.40 -2.02 16 21 C -0.11 -1.31 10.04 -39.59 -0.40 -1.71 16 22 C -0.16 -2.10 10.03 -39.51 -0.40 -2.50 16 23 C 0.10 1.51 7.25 -39.42 -0.29 1.22 16 24 F -0.14 -2.36 16.61 2.25 0.04 -2.32 16 25 H 0.06 1.69 6.83 -51.93 -0.35 1.33 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.33 6.77 7.35 -39.29 -0.29 6.48 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.31 6.13 -51.93 -0.32 0.99 16 32 H 0.13 1.73 5.61 -52.49 -0.29 1.43 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 296.60 15.07 4.47 4.47 Total: -1.00 -28.87 296.60 -8.69 -37.56 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.54 Total: 6.01 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.76 Total: -23.02 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.13 Total: -38.83 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.87 -8.69 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds