Wall clock time and date at job start Mon Mar 30 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46788 * 2 1 4 4 C 1.50703 * 109.46985 * 240.00561 * 2 1 3 5 5 H 1.07996 * 119.99834 * 245.46042 * 4 2 1 6 6 C 1.37877 * 120.00458 * 65.45946 * 4 2 1 7 7 N 1.31519 * 119.99475 * 9.54517 * 6 4 2 8 8 Si 1.86791 * 120.00268 * 189.54438 * 6 4 2 9 9 H 1.48495 * 109.47363 * 84.99287 * 8 6 4 10 10 H 1.48503 * 109.47462 * 204.99519 * 8 6 4 11 11 H 1.48503 * 109.47250 * 324.99332 * 8 6 4 12 12 N 1.46896 * 109.47381 * 120.00291 * 2 1 3 13 13 C 1.46898 * 110.99897 * 275.00133 * 12 2 1 14 14 H 1.09001 * 115.56276 * 9.31315 * 13 12 2 15 15 C 1.53000 * 117.50010 * 223.61958 * 13 12 2 16 16 C 1.52999 * 60.00118 * 252.51210 * 15 13 12 17 17 H 1.08994 * 117.49839 * 252.48440 * 16 15 13 18 18 C 1.50700 * 117.50138 * 107.48995 * 16 15 13 19 19 C 1.38218 * 120.01102 * 351.11199 * 18 16 15 20 20 C 1.38224 * 120.02567 * 179.71918 * 19 18 16 21 21 C 1.38274 * 120.04950 * 0.56011 * 20 19 18 22 22 C 1.38173 * 120.02350 * 359.72207 * 21 20 19 23 23 C 1.38432 * 120.01446 * 171.39337 * 18 16 15 24 24 F 1.35105 * 120.02766 * 359.97438 * 23 18 16 25 25 H 1.09007 * 109.47375 * 63.69374 * 1 2 3 26 26 H 1.09003 * 109.47329 * 183.68851 * 1 2 3 27 27 H 1.08999 * 109.47086 * 303.69038 * 1 2 3 28 28 H 0.97004 * 119.99316 * 180.02562 * 7 6 4 29 29 H 1.00895 * 110.99921 * 151.04552 * 12 2 1 30 30 H 1.08997 * 117.50131 * 145.01908 * 15 13 12 31 31 H 1.09002 * 117.51726 * 359.97438 * 15 13 12 32 32 H 1.07998 * 119.98922 * 0.02562 * 19 18 16 33 33 H 1.07999 * 119.97879 * 180.30470 * 20 19 18 34 34 H 1.07994 * 119.98980 * 179.74467 * 21 20 19 35 35 H 1.08005 * 120.01387 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2990 1.0357 -2.5935 8 14 2.1763 -1.1776 -4.0102 9 1 1.0246 -2.0608 -4.3244 10 1 2.4229 -0.2609 -5.1522 11 1 3.3849 -2.0066 -3.7711 12 7 2.0197 -0.6925 1.1993 13 6 2.0824 0.2225 2.3468 14 1 1.6225 1.1990 2.1954 15 6 3.3267 0.1577 3.2349 16 6 1.9930 -0.3912 3.7455 17 1 1.4744 0.1813 4.5145 18 6 1.8471 -1.8881 3.8405 19 6 2.8184 -2.7127 3.3047 20 6 2.6878 -4.0857 3.3968 21 6 1.5800 -4.6360 4.0148 22 6 0.6049 -3.8136 4.5460 23 6 0.7376 -2.4379 4.4593 24 9 -0.2150 -1.6329 4.9789 25 1 -0.3634 0.4554 -0.9213 26 1 -0.3634 -1.0255 0.0661 27 1 -0.3633 0.5700 0.8551 28 1 1.1314 1.4106 -3.4723 29 1 2.9173 -1.1205 1.0286 30 1 3.6854 1.0916 3.6676 31 1 4.0987 -0.5641 2.9682 32 1 3.6821 -2.2841 2.8183 33 1 3.4496 -4.7293 2.9823 34 1 1.4769 -5.7089 4.0825 35 1 -0.2602 -4.2436 5.0289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381433365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:06 Heat of formation + Delta-G solvation = -14.259436 kcal Electronic energy + Delta-G solvation = -17909.319397 eV Core-core repulsion = 15014.530748 eV Total energy + Delta-G solvation = -2894.788650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.78069 -40.45199 -38.47453 -36.26613 -33.66268 -31.48930 -31.23574 -29.40112 -27.23895 -24.96472 -23.49577 -22.77954 -21.82499 -20.98913 -18.57613 -18.43975 -17.43950 -16.89442 -16.69933 -16.49912 -15.87043 -15.58991 -15.17645 -14.96873 -14.38145 -14.12548 -13.96144 -13.51873 -13.36439 -13.05623 -12.81039 -12.69342 -12.58179 -12.34852 -12.19611 -12.05212 -11.81775 -11.75989 -11.21489 -10.94985 -10.54371 -9.69866 -9.42648 -8.80035 -8.17738 -6.27002 0.33750 0.41517 1.41771 1.44320 1.52628 2.41164 2.64771 3.09078 3.14817 3.42782 3.46656 3.73353 3.88587 4.07611 4.18878 4.26246 4.38310 4.49275 4.56574 4.76658 4.80863 4.87217 5.04006 5.05747 5.15580 5.17234 5.24378 5.35196 5.41733 5.55620 5.64332 5.67201 5.78854 6.10006 6.13267 6.45358 6.77487 7.00164 7.42561 8.91528 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.006015 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.982124 B = 4654.251158 C = 5011.610211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.219 3.781 3 H -0.021 1.021 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.646 5.646 13 C 0.029 3.971 14 H 0.092 0.908 15 C -0.175 4.175 16 C -0.123 4.123 17 H 0.110 0.890 18 C -0.069 4.069 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.101 4.101 22 C -0.159 4.159 23 C 0.066 3.934 24 F -0.155 7.155 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.337 0.663 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -8.582 13.443 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 H -0.003 1.003 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.276 5.276 13 C -0.083 4.083 14 H 0.110 0.890 15 C -0.213 4.213 16 C -0.143 4.143 17 H 0.128 0.872 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.145 4.145 21 C -0.119 4.119 22 C -0.178 4.178 23 C 0.047 3.953 24 F -0.134 7.134 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.836 -8.666 13.466 16.262 hybrid contribution 0.285 0.773 -1.067 1.348 sum 3.121 -7.893 12.398 15.026 Atomic orbital electron populations 1.21473 0.98342 0.98427 0.98147 1.18901 0.92008 0.91386 0.86628 1.00335 1.21514 1.36148 1.08287 0.91605 0.92030 1.25711 0.95080 0.95453 1.02069 1.70095 1.45797 1.15405 1.24552 0.85569 0.78816 0.78568 0.78688 1.20266 1.21077 1.18837 1.60259 1.31667 1.31279 1.04347 1.22555 1.01719 0.95606 0.88435 0.88992 1.23642 0.90691 1.03567 1.03428 1.21278 1.02595 0.91856 0.98522 0.87193 1.19126 0.94396 0.94546 0.98886 1.21030 0.98478 0.93814 0.97599 1.21512 0.99130 0.94678 0.99158 1.21303 0.92824 1.01081 0.96709 1.21341 1.02153 0.90741 1.03535 1.17842 0.87667 0.89121 1.00694 1.91413 1.63061 1.73896 1.84999 0.94212 0.95086 0.96122 0.92837 0.84377 0.86744 0.87309 0.84907 0.83104 0.82260 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 9.28 71.98 0.67 -4.69 16 2 C 0.22 11.19 2.36 44.17 0.10 11.29 16 3 H -0.02 -1.19 7.68 -2.39 -0.02 -1.21 16 4 C -0.54 -29.26 8.48 25.60 0.22 -29.04 16 5 H 0.06 3.26 7.69 -2.91 -0.02 3.24 16 6 C 0.02 0.91 5.17 84.65 0.44 1.35 16 7 N -0.92 -53.45 12.16 21.45 0.26 -53.19 16 8 Si 0.96 43.20 29.55 68.60 2.03 45.23 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 12 N -0.65 -27.07 5.43 -473.32 -2.57 -29.64 16 13 C 0.03 1.03 6.02 44.92 0.27 1.30 16 14 H 0.09 3.55 7.77 -2.39 -0.02 3.53 16 15 C -0.17 -4.80 9.56 30.59 0.29 -4.51 16 16 C -0.12 -3.81 5.80 -11.54 -0.07 -3.88 16 17 H 0.11 3.29 7.87 -2.39 -0.02 3.27 16 18 C -0.07 -2.11 5.26 -19.82 -0.10 -2.22 16 19 C -0.09 -2.47 8.41 22.26 0.19 -2.28 16 20 C -0.13 -2.86 10.04 22.28 0.22 -2.64 16 21 C -0.10 -2.15 10.04 22.26 0.22 -1.92 16 22 C -0.16 -3.97 10.03 22.31 0.22 -3.75 16 23 C 0.07 2.03 7.25 22.37 0.16 2.19 16 24 F -0.15 -5.12 16.61 44.97 0.75 -4.37 16 25 H 0.04 2.17 6.83 -2.38 -0.02 2.15 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.34 13.50 7.35 -89.70 -0.66 12.84 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.73 6.13 -2.39 -0.01 2.71 16 32 H 0.13 3.34 5.61 -2.91 -0.02 3.33 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -62.35 296.60 3.74 -58.61 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.44 Total: 22.16 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 2.84 Total: -38.81 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.31 Total: -82.83 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.75 Total: -4.37 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -62.35 3.74 -58.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.354 kcal (2) G-P(sol) polarization free energy of solvation -62.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds