Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46904 * 109.46652 * 119.99575 * 2 1 3 13 13 C 1.46892 * 111.00226 * 274.99776 * 12 2 1 14 14 H 1.08999 * 115.55174 * 9.28000 * 13 12 2 15 15 C 1.53007 * 117.50121 * 223.60924 * 13 12 2 16 16 C 1.52999 * 117.49935 * 154.98496 * 13 12 2 17 17 H 1.08997 * 117.50151 * 0.02562 * 16 13 12 18 18 C 1.50701 * 117.50279 * 214.97956 * 16 13 12 19 19 C 1.38216 * 120.01097 * 300.00581 * 18 16 13 20 20 C 1.38229 * 120.02459 * 179.97438 * 19 18 16 21 21 C 1.38262 * 120.05124 * 359.97438 * 20 19 18 22 22 C 1.38178 * 120.02601 * 0.04724 * 21 20 19 23 23 C 1.38438 * 120.01574 * 119.72248 * 18 16 13 24 24 F 1.35106 * 120.02285 * 0.02562 * 23 18 16 25 25 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 26 26 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 28 28 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00236 * 38.95525 * 12 2 1 30 30 H 1.08997 * 117.49619 * 0.02562 * 15 13 12 31 31 H 1.09003 * 117.49583 * 144.99741 * 15 13 12 32 32 H 1.08003 * 119.99243 * 359.94944 * 19 18 16 33 33 H 1.08001 * 119.97434 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.98987 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.01454 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2226 2.3469 14 1 1.6230 1.1994 2.1950 15 6 3.3265 0.1576 3.2352 16 6 1.9924 -0.3909 3.7456 17 1 1.8870 -1.4735 3.8145 18 6 1.2752 0.4013 4.8082 19 6 1.7295 1.6591 5.1576 20 6 1.0716 2.3862 6.1318 21 6 -0.0418 1.8566 6.7575 22 6 -0.4976 0.5993 6.4102 23 6 0.1576 -0.1279 5.4306 24 9 -0.2904 -1.3551 5.0862 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9041 -0.5278 -4.4374 29 1 1.4494 -1.4979 1.4102 30 1 4.0985 -0.5639 2.9680 31 1 3.6855 1.0916 3.6676 32 1 2.5992 2.0738 4.6695 33 1 1.4275 3.3687 6.4045 34 1 -0.5554 2.4258 7.5183 35 1 -1.3671 0.1856 6.8993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381433368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = 11.128357 kcal Electronic energy + Delta-G solvation = -17607.390242 eV Core-core repulsion = 14713.702489 eV Total energy + Delta-G solvation = -2893.687752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.87426 -39.53682 -37.45009 -34.83546 -32.03241 -30.74029 -30.48630 -28.05592 -25.07444 -24.17387 -22.59767 -21.25062 -20.44345 -20.11228 -17.81393 -16.76150 -16.42673 -16.03876 -15.61011 -15.05217 -14.88537 -14.28677 -14.15841 -13.39318 -13.26222 -12.98396 -12.69172 -12.53105 -12.26390 -12.14089 -11.66654 -11.37511 -11.20197 -11.09363 -10.69055 -10.47905 -10.21377 -10.10564 -9.54244 -9.11222 -9.02154 -8.64552 -8.52381 -7.41575 -6.04965 -4.02618 1.03360 1.06914 3.25580 3.35060 3.37998 3.39713 4.12341 4.24154 4.39971 4.47641 4.61417 4.78099 4.91667 5.00917 5.17242 5.21280 5.25362 5.36319 5.67659 5.75443 5.85646 5.98548 6.03548 6.05841 6.18874 6.23392 6.26785 6.36472 6.43960 6.50366 6.73832 6.77575 7.09432 7.69550 7.88367 8.24350 8.67325 9.05831 9.57217 11.08547 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.005072 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.188216 B = 5518.859891 C = 5589.104616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 H 0.036 0.964 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.296 1.296 12 N -0.639 5.639 13 C 0.053 3.947 14 H 0.094 0.906 15 C -0.160 4.160 16 C -0.148 4.148 17 H 0.116 0.884 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.153 4.153 23 C 0.099 3.901 24 F -0.137 7.137 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.337 0.663 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 6.036 20.457 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.075 3.925 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.224 1.224 12 N -0.269 5.269 13 C -0.059 4.059 14 H 0.112 0.888 15 C -0.199 4.199 16 C -0.168 4.168 17 H 0.134 0.866 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.145 4.145 21 C -0.122 4.122 22 C -0.172 4.172 23 C 0.080 3.920 24 F -0.116 7.116 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.918 6.046 20.036 21.131 hybrid contribution -1.769 0.657 -0.041 1.888 sum -4.687 6.703 19.996 21.604 Atomic orbital electron populations 1.22888 1.01326 1.01031 0.98918 1.19727 0.88647 0.95126 0.88952 0.94614 1.20949 1.31329 1.13820 0.87679 0.89985 1.24925 0.95948 0.96603 0.95838 1.69882 1.45830 1.40336 0.97841 0.86897 0.80594 0.83951 0.76897 1.20766 1.19493 1.22368 1.60427 1.56991 1.07960 1.01482 1.22644 0.99971 0.97239 0.86025 0.88831 1.23314 0.91353 1.02450 1.02748 1.21417 1.01619 0.99037 0.94707 0.86611 1.19349 0.94833 0.95536 0.97486 1.21033 1.00063 0.93184 0.97181 1.21183 0.96132 1.00248 0.96979 1.20956 0.96694 0.94693 0.99886 1.21120 1.01549 0.95955 0.98586 1.17540 0.95159 0.81711 0.97612 1.91496 1.88472 1.40286 1.91298 0.93602 0.92635 0.95474 0.92655 0.84376 0.87686 0.88926 0.84757 0.85449 0.85298 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.64 37.16 0.32 -3.68 16 2 C 0.18 4.36 2.06 -68.86 -0.14 4.22 16 3 H 0.04 0.88 6.79 -51.93 -0.35 0.53 16 4 C -0.50 -14.15 9.42 -34.44 -0.32 -14.48 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.44 16 10 H -0.27 -6.42 6.53 56.52 0.37 -6.06 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 N -0.64 -13.09 6.48 -100.96 -0.65 -13.74 16 13 C 0.05 0.90 5.60 -67.71 -0.38 0.52 16 14 H 0.09 1.61 7.77 -51.93 -0.40 1.21 16 15 C -0.16 -2.28 9.79 -26.72 -0.26 -2.54 16 16 C -0.15 -2.15 5.59 -91.77 -0.51 -2.66 16 17 H 0.12 1.73 7.87 -51.93 -0.41 1.32 16 18 C -0.07 -0.94 5.62 -104.56 -0.59 -1.53 16 19 C -0.10 -1.09 9.30 -39.59 -0.37 -1.46 16 20 C -0.13 -1.21 10.04 -39.58 -0.40 -1.60 16 21 C -0.10 -0.96 10.04 -39.59 -0.40 -1.35 16 22 C -0.15 -1.64 10.03 -39.52 -0.40 -2.04 16 23 C 0.10 1.31 7.25 -39.42 -0.29 1.03 16 24 F -0.14 -1.99 16.62 2.25 0.04 -1.96 16 25 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 26 H 0.05 1.18 8.13 -51.93 -0.42 0.76 16 27 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.34 6.59 8.43 -39.29 -0.33 6.26 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.11 6.18 -51.93 -0.32 0.78 16 32 H 0.13 1.35 6.02 -52.48 -0.32 1.03 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -30.66 291.97 -7.85 -38.51 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.44 Total: 5.53 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.83 Total: -23.71 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.12 Total: -40.68 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.66 -7.85 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.643 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds