Wall clock time and date at job start Mon Mar 30 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46904 * 109.46652 * 119.99575 * 2 1 3 13 13 C 1.46892 * 111.00226 * 274.99776 * 12 2 1 14 14 H 1.08999 * 115.55174 * 9.28000 * 13 12 2 15 15 C 1.53007 * 117.50121 * 223.60924 * 13 12 2 16 16 C 1.52999 * 117.49935 * 154.98496 * 13 12 2 17 17 H 1.08997 * 117.50151 * 0.02562 * 16 13 12 18 18 C 1.50701 * 117.50279 * 214.97956 * 16 13 12 19 19 C 1.38216 * 120.01097 * 300.00581 * 18 16 13 20 20 C 1.38229 * 120.02459 * 179.97438 * 19 18 16 21 21 C 1.38262 * 120.05124 * 359.97438 * 20 19 18 22 22 C 1.38178 * 120.02601 * 0.04724 * 21 20 19 23 23 C 1.38438 * 120.01574 * 119.72248 * 18 16 13 24 24 F 1.35106 * 120.02285 * 0.02562 * 23 18 16 25 25 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 26 26 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 28 28 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00236 * 38.95525 * 12 2 1 30 30 H 1.08997 * 117.49619 * 0.02562 * 15 13 12 31 31 H 1.09003 * 117.49583 * 144.99741 * 15 13 12 32 32 H 1.08003 * 119.99243 * 359.94944 * 19 18 16 33 33 H 1.08001 * 119.97434 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.98987 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.01454 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2226 2.3469 14 1 1.6230 1.1994 2.1950 15 6 3.3265 0.1576 3.2352 16 6 1.9924 -0.3909 3.7456 17 1 1.8870 -1.4735 3.8145 18 6 1.2752 0.4013 4.8082 19 6 1.7295 1.6591 5.1576 20 6 1.0716 2.3862 6.1318 21 6 -0.0418 1.8566 6.7575 22 6 -0.4976 0.5993 6.4102 23 6 0.1576 -0.1279 5.4306 24 9 -0.2904 -1.3551 5.0862 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9041 -0.5278 -4.4374 29 1 1.4494 -1.4979 1.4102 30 1 4.0985 -0.5639 2.9680 31 1 3.6855 1.0916 3.6676 32 1 2.5992 2.0738 4.6695 33 1 1.4275 3.3687 6.4045 34 1 -0.5554 2.4258 7.5183 35 1 -1.3671 0.1856 6.8993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381433368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:10 Heat of formation + Delta-G solvation = -8.455528 kcal Electronic energy + Delta-G solvation = -17608.239463 eV Core-core repulsion = 14713.702489 eV Total energy + Delta-G solvation = -2894.536973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.87738 -40.49542 -38.69355 -36.47924 -34.05101 -31.75964 -31.37484 -29.64770 -27.15204 -25.09279 -23.47569 -22.74855 -21.88797 -21.39830 -18.82320 -18.68267 -17.48246 -17.16108 -16.70576 -16.59565 -16.30735 -15.51740 -15.13688 -14.96303 -14.70847 -14.37165 -14.13487 -13.99268 -13.49021 -13.41368 -13.07983 -12.84661 -12.62986 -12.26319 -12.06263 -12.04351 -11.76888 -11.52447 -11.42871 -11.08855 -10.77417 -9.86766 -9.56802 -8.93894 -8.28613 -6.31665 0.18599 0.26619 1.28809 1.34018 1.44502 2.30858 2.54285 2.99585 3.05247 3.27123 3.34356 3.67436 3.78893 3.93371 4.11544 4.19792 4.31486 4.40342 4.42428 4.45219 4.48632 4.64873 4.74310 4.91194 4.95249 5.02823 5.14000 5.19554 5.26250 5.32036 5.45733 5.51350 5.63588 5.97679 6.02011 6.60844 6.65472 6.75054 7.33118 8.88858 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.005072 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.188216 B = 5518.859891 C = 5589.104616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.191 3.809 3 H 0.033 0.967 4 C -0.507 4.507 5 H 0.035 0.965 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.249 1.249 11 H -0.296 1.296 12 N -0.653 5.653 13 C 0.028 3.972 14 H 0.095 0.905 15 C -0.147 4.147 16 C -0.130 4.130 17 H 0.103 0.897 18 C -0.093 4.093 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.157 4.157 23 C 0.069 3.931 24 F -0.154 7.154 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.336 0.664 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 8.888 23.055 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 H 0.050 0.950 4 C -0.545 4.545 5 H 0.053 0.947 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.173 1.173 11 H -0.224 1.224 12 N -0.282 5.282 13 C -0.083 4.083 14 H 0.113 0.887 15 C -0.185 4.185 16 C -0.150 4.150 17 H 0.121 0.879 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.140 4.140 21 C -0.113 4.113 22 C -0.175 4.175 23 C 0.050 3.950 24 F -0.133 7.133 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.094 8.897 22.673 24.698 hybrid contribution -1.339 -0.275 -0.724 1.547 sum -5.433 8.622 21.949 24.199 Atomic orbital electron populations 1.22746 0.99555 1.01321 0.99847 1.19459 0.89844 0.94199 0.88329 0.94956 1.21231 1.30502 1.12647 0.90164 0.94654 1.25801 0.97484 1.00084 0.95275 1.70043 1.47855 1.42594 0.98569 0.85812 0.78932 0.79947 0.77409 1.19430 1.17287 1.22352 1.60279 1.57098 1.08688 1.02183 1.22631 1.02833 0.96803 0.86032 0.88705 1.23396 0.90649 1.03454 1.00991 1.21263 1.01613 0.98589 0.93494 0.87880 1.19347 0.95507 0.96592 0.98015 1.21251 1.00604 0.92440 0.97741 1.21596 0.95554 1.01189 0.95628 1.21415 0.96244 0.93940 0.99731 1.21421 1.01845 0.96467 0.97787 1.17927 0.96133 0.81725 0.99202 1.91448 1.88750 1.41434 1.91665 0.94281 0.92823 0.92651 0.92501 0.84429 0.88567 0.86093 0.83673 0.82305 0.81862 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.45 8.64 71.98 0.62 -6.83 16 2 C 0.19 9.04 2.06 44.17 0.09 9.13 16 3 H 0.03 1.56 6.79 -2.39 -0.02 1.54 16 4 C -0.51 -29.64 9.42 25.60 0.24 -29.40 16 5 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 6 C 0.01 0.62 5.45 84.65 0.46 1.08 16 7 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 8 Si 0.95 45.23 24.37 68.60 1.67 46.90 16 9 H -0.27 -12.15 6.87 99.48 0.68 -11.46 16 10 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 12 N -0.65 -27.09 6.48 -473.32 -3.07 -30.16 16 13 C 0.03 0.92 5.60 44.92 0.25 1.18 16 14 H 0.10 3.12 7.77 -2.39 -0.02 3.10 16 15 C -0.15 -4.01 9.79 30.60 0.30 -3.71 16 16 C -0.13 -3.70 5.59 -11.54 -0.06 -3.76 16 17 H 0.10 3.14 7.87 -2.39 -0.02 3.12 16 18 C -0.09 -2.34 5.62 -19.82 -0.11 -2.45 16 19 C -0.10 -1.99 9.30 22.26 0.21 -1.79 16 20 C -0.12 -1.77 10.04 22.27 0.22 -1.55 16 21 C -0.10 -1.34 10.04 22.26 0.22 -1.12 16 22 C -0.16 -2.94 10.03 22.31 0.22 -2.71 16 23 C 0.07 1.75 7.25 22.37 0.16 1.91 16 24 F -0.15 -4.50 16.62 44.97 0.75 -3.75 16 25 H 0.04 1.70 3.27 -2.38 -0.01 1.69 16 26 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 27 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.34 13.56 8.43 -89.69 -0.76 12.80 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.12 2.57 6.18 -2.39 -0.01 2.55 16 32 H 0.15 2.40 6.02 -2.91 -0.02 2.39 16 33 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -68.65 291.97 2.75 -65.90 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.27 Total: 21.15 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 2.83 Total: -40.02 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.77 Total: -90.18 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.75 Total: -3.75 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Total: -68.65 2.75 -65.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381433368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.444 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds