Wall clock time and date at job start Mon Mar 30 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 C 1.50704 * 109.47289 * 119.99798 * 2 1 3 5 5 H 1.08001 * 119.99909 * 119.99488 * 4 2 1 6 6 C 1.37876 * 119.99783 * 300.00399 * 4 2 1 7 7 N 1.31516 * 120.00234 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99812 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 59.99608 * 8 6 4 10 10 H 1.48501 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47384 * 299.99762 * 8 6 4 12 12 N 1.46898 * 109.47062 * 239.99613 * 2 1 3 13 13 C 1.46904 * 111.00107 * 84.99953 * 12 2 1 14 14 H 1.09007 * 110.42882 * 32.46126 * 13 12 2 15 15 C 1.55238 * 110.46809 * 269.81105 * 13 12 2 16 16 C 1.54894 * 102.58338 * 203.38989 * 15 13 12 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 13 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 20 20 O 1.42905 * 110.03162 * 240.71495 * 18 17 16 21 21 C 1.42900 * 114.00016 * 268.54767 * 20 18 17 22 22 F 1.39900 * 109.46597 * 299.99473 * 21 20 18 23 23 F 1.39895 * 109.47176 * 59.99578 * 21 20 18 24 24 H 1.09000 * 109.47535 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47071 * 299.99919 * 1 2 3 26 26 H 1.09000 * 109.47692 * 60.00220 * 1 2 3 27 27 H 0.96999 * 119.99973 * 180.02562 * 7 6 4 28 28 H 1.00893 * 111.00206 * 208.95315 * 12 2 1 29 29 H 1.08996 * 110.89448 * 85.10553 * 15 13 12 30 30 H 1.08993 * 110.76342 * 321.62219 * 15 13 12 31 31 H 1.09002 * 110.48891 * 279.18596 * 16 15 13 32 32 H 1.08998 * 110.48494 * 156.67683 * 16 15 13 33 33 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 34 34 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 35 35 H 1.09001 * 109.47242 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 1 2.3200 1.2332 -2.0151 15 6 0.7412 0.2057 -3.1286 16 6 1.1667 0.6840 -4.5390 17 6 2.5430 0.0252 -4.7661 18 6 3.1252 -0.2683 -3.3724 19 1 3.2896 -1.3393 -3.2543 20 8 4.3547 0.4385 -3.1967 21 6 5.5126 -0.3046 -3.5827 22 9 5.5944 -1.4720 -2.8161 23 9 5.4201 -0.6418 -4.9373 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7094 1.1618 3.4844 28 1 2.9172 -1.1205 -1.0287 29 1 0.0247 0.8976 -2.6859 30 1 0.3308 -0.8031 -3.1702 31 1 1.2551 1.7702 -4.5630 32 1 0.4525 0.3437 -5.2888 33 1 2.4248 -0.9034 -5.3245 34 1 3.1979 0.7064 -5.3093 35 1 6.4042 0.3006 -3.4186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382262500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:16 Heat of formation + Delta-G solvation = -169.715201 kcal Electronic energy + Delta-G solvation = -19237.337531 eV Core-core repulsion = 15905.038589 eV Total energy + Delta-G solvation = -3332.298942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.01516 -47.12038 -39.01068 -36.25905 -34.60430 -32.09335 -28.87205 -28.01366 -26.18457 -25.06940 -24.56968 -20.49094 -20.25480 -19.83595 -18.13737 -17.75330 -17.53393 -16.35533 -15.56891 -15.06296 -14.67248 -14.04262 -13.94136 -13.84041 -13.50934 -13.33495 -13.04394 -12.67429 -12.51742 -12.38602 -11.72446 -11.44900 -11.18242 -10.95894 -10.84199 -10.70543 -10.57352 -10.37894 -10.31738 -10.05151 -10.03962 -9.69941 -8.78031 -8.44287 -7.32943 -6.00556 -4.06910 3.09327 3.32583 3.36633 3.39843 3.71347 4.41456 4.50766 4.68663 4.78329 4.93508 5.06559 5.30022 5.36070 5.46777 5.68406 5.77257 5.86981 6.00022 6.03258 6.16742 6.24379 6.48390 6.66508 6.82797 6.95439 7.19855 7.26142 7.53056 7.79995 7.91818 8.28581 8.39088 8.66933 9.02845 9.58758 11.05646 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.006589 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.465431 B = 4248.610171 C = 5166.773573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.681 5.681 13 C 0.091 3.909 14 H 0.057 0.943 15 C -0.107 4.107 16 C -0.124 4.124 17 C -0.138 4.138 18 C 0.068 3.932 19 H 0.083 0.917 20 O -0.377 6.377 21 C 0.401 3.599 22 F -0.207 7.207 23 F -0.213 7.213 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.010 0.990 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -0.157 -13.783 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.020 4.020 14 H 0.075 0.925 15 C -0.146 4.146 16 C -0.162 4.162 17 C -0.176 4.176 18 C 0.011 3.989 19 H 0.101 0.899 20 O -0.299 6.299 21 C 0.309 3.691 22 F -0.189 7.189 23 F -0.195 7.195 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.871 -0.139 -13.728 14.567 hybrid contribution 1.153 -0.259 0.985 1.538 sum 6.024 -0.398 -12.743 14.100 Atomic orbital electron populations 1.21790 0.97804 0.99327 0.99577 1.19161 0.92696 0.92217 0.85349 0.98017 1.21243 1.31456 1.12532 0.90536 0.92325 1.24905 0.95049 0.94998 0.98990 1.69889 1.36642 1.22852 1.23526 0.86591 0.79086 0.79791 0.82105 1.20349 1.21299 1.20205 1.60914 1.31931 1.32397 1.05993 1.22498 0.92058 0.96251 0.91143 0.92523 1.22609 0.96720 1.02102 0.93138 1.22340 0.95733 1.00192 0.97912 1.22586 0.97725 1.01295 0.96002 1.23356 0.82647 0.96696 0.96165 0.89928 1.88493 1.14924 1.41846 1.84600 1.23134 0.93315 0.80374 0.72233 1.93077 1.96556 1.53416 1.75803 1.93048 1.96936 1.93551 1.35986 0.95084 0.90276 0.97112 0.92898 0.84973 0.90954 0.90511 0.91700 0.91694 0.91251 0.90941 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.01 37.16 0.33 -2.81 16 2 C 0.21 5.45 2.60 -68.87 -0.18 5.27 16 3 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.74 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.68 -14.75 6.16 -99.02 -0.61 -15.36 16 13 C 0.09 1.68 2.91 -65.86 -0.19 1.49 16 14 H 0.06 1.15 7.37 -51.93 -0.38 0.77 16 15 C -0.11 -1.73 5.65 -24.55 -0.14 -1.87 16 16 C -0.12 -1.61 6.82 -25.07 -0.17 -1.78 16 17 C -0.14 -1.82 5.91 -25.62 -0.15 -1.97 16 18 C 0.07 1.07 2.61 -25.62 -0.07 1.00 16 19 H 0.08 1.34 7.04 -51.93 -0.37 0.97 16 20 O -0.38 -5.72 10.20 -35.23 -0.36 -6.08 16 21 C 0.40 4.86 6.27 101.05 0.63 5.49 16 22 F -0.21 -2.95 16.65 2.25 0.04 -2.92 16 23 F -0.21 -2.64 16.45 2.25 0.04 -2.61 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.01 0.22 5.74 -51.93 -0.30 -0.07 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.33 7.25 7.82 -39.30 -0.31 6.95 16 29 H 0.07 1.21 6.63 -51.93 -0.34 0.86 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 35 H 0.16 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -29.40 288.05 -6.15 -35.55 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.88 Total: 3.87 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.32 Total: -8.27 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.02 Total: -40.38 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.36 Total: -6.08 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.40 -6.15 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382262500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.166 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds