Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 C 1.50704 * 109.47289 * 119.99798 * 2 1 3 5 5 H 1.08001 * 119.99909 * 119.99488 * 4 2 1 6 6 C 1.37876 * 119.99783 * 300.00399 * 4 2 1 7 7 N 1.31516 * 120.00234 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99812 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 59.99608 * 8 6 4 10 10 H 1.48501 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47384 * 299.99762 * 8 6 4 12 12 N 1.46898 * 109.47062 * 239.99613 * 2 1 3 13 13 C 1.46904 * 111.00107 * 84.99953 * 12 2 1 14 14 H 1.09007 * 110.42882 * 32.46126 * 13 12 2 15 15 C 1.55238 * 110.46809 * 269.81105 * 13 12 2 16 16 C 1.54894 * 102.58338 * 203.38989 * 15 13 12 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 13 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 20 20 O 1.42905 * 110.03162 * 240.71495 * 18 17 16 21 21 C 1.42900 * 114.00016 * 268.54767 * 20 18 17 22 22 F 1.39900 * 109.46597 * 299.99473 * 21 20 18 23 23 F 1.39895 * 109.47176 * 59.99578 * 21 20 18 24 24 H 1.09000 * 109.47535 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47071 * 299.99919 * 1 2 3 26 26 H 1.09000 * 109.47692 * 60.00220 * 1 2 3 27 27 H 0.96999 * 119.99973 * 180.02562 * 7 6 4 28 28 H 1.00893 * 111.00206 * 208.95315 * 12 2 1 29 29 H 1.08996 * 110.89448 * 85.10553 * 15 13 12 30 30 H 1.08993 * 110.76342 * 321.62219 * 15 13 12 31 31 H 1.09002 * 110.48891 * 279.18596 * 16 15 13 32 32 H 1.08998 * 110.48494 * 156.67683 * 16 15 13 33 33 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 34 34 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 35 35 H 1.09001 * 109.47242 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 1 2.3200 1.2332 -2.0151 15 6 0.7412 0.2057 -3.1286 16 6 1.1667 0.6840 -4.5390 17 6 2.5430 0.0252 -4.7661 18 6 3.1252 -0.2683 -3.3724 19 1 3.2896 -1.3393 -3.2543 20 8 4.3547 0.4385 -3.1967 21 6 5.5126 -0.3046 -3.5827 22 9 5.5944 -1.4720 -2.8161 23 9 5.4201 -0.6418 -4.9373 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7094 1.1618 3.4844 28 1 2.9172 -1.1205 -1.0287 29 1 0.0247 0.8976 -2.6859 30 1 0.3308 -0.8031 -3.1702 31 1 1.2551 1.7702 -4.5630 32 1 0.4525 0.3437 -5.2888 33 1 2.4248 -0.9034 -5.3245 34 1 3.1979 0.7064 -5.3093 35 1 6.4042 0.3006 -3.4186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382262500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -189.450710 kcal Electronic energy + Delta-G solvation = -19238.193327 eV Core-core repulsion = 15905.038589 eV Total energy + Delta-G solvation = -3333.154738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.02003 -48.13302 -40.29260 -37.70501 -36.23682 -34.02328 -30.64578 -29.24764 -27.72737 -26.91615 -25.82870 -22.01775 -21.61378 -21.43463 -19.28291 -18.98398 -18.57291 -18.18722 -16.95038 -16.50276 -16.42786 -15.65378 -15.10750 -15.05383 -14.86832 -14.63824 -14.49196 -14.12418 -13.76451 -13.53751 -13.37600 -13.05437 -12.80593 -12.68935 -12.59757 -12.31089 -12.15679 -11.99213 -11.86885 -11.64339 -11.45727 -11.20332 -10.83307 -10.56289 -9.15360 -8.14177 -6.28804 1.40964 1.42957 1.50725 2.06909 2.40598 2.73190 3.13685 3.43344 3.46389 3.73741 3.77175 3.89945 4.01162 4.29210 4.45855 4.48100 4.64577 4.71651 4.83400 4.91900 5.01649 5.05707 5.13104 5.24720 5.29797 5.38719 5.50801 5.61886 5.71371 5.87629 6.22160 6.42146 6.73804 6.94806 7.41390 8.91173 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.006589 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.465431 B = 4248.610171 C = 5166.773573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.219 3.781 3 H -0.034 1.034 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.083 3.917 14 H 0.032 0.968 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.131 4.131 18 C 0.073 3.927 19 H 0.075 0.925 20 O -0.395 6.395 21 C 0.397 3.603 22 F -0.222 7.222 23 F -0.213 7.213 24 H 0.026 0.974 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.328 0.672 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -0.638 -14.901 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.111 3.889 3 H -0.016 1.016 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.307 5.307 13 C -0.027 4.027 14 H 0.050 0.950 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.169 4.169 18 C 0.016 3.984 19 H 0.093 0.907 20 O -0.317 6.317 21 C 0.307 3.693 22 F -0.204 7.204 23 F -0.195 7.195 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.488 -0.624 -14.869 15.862 hybrid contribution 0.991 -0.085 1.299 1.636 sum 6.478 -0.709 -13.571 15.054 Atomic orbital electron populations 1.21600 0.97306 0.98873 0.99426 1.18943 0.93040 0.90340 0.86566 1.01648 1.21579 1.31869 1.12769 0.91832 0.92547 1.25724 0.95117 0.95671 1.01993 1.70019 1.37346 1.23961 1.24270 0.85554 0.78696 0.78704 0.78325 1.19686 1.20682 1.19613 1.60872 1.31653 1.32665 1.05485 1.22611 0.94969 0.94269 0.90858 0.95016 1.22558 0.95088 1.01884 0.94873 1.22308 0.96104 1.00544 0.96169 1.22566 0.97664 1.02318 0.94320 1.23205 0.82574 0.96035 0.96630 0.90690 1.88468 1.15518 1.42582 1.85119 1.23842 0.93513 0.80187 0.71803 1.93048 1.96546 1.54490 1.76292 1.93042 1.96921 1.93580 1.35989 0.95453 0.92756 0.94913 0.92769 0.85430 0.91987 0.90722 0.91157 0.89064 0.89749 0.89922 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.76 9.01 71.98 0.65 -5.11 16 2 C 0.22 11.55 2.60 44.17 0.11 11.67 16 3 H -0.03 -2.00 7.43 -2.39 -0.02 -2.02 16 4 C -0.54 -30.70 8.59 25.60 0.22 -30.48 16 5 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 N -0.68 -29.83 6.16 -467.19 -2.88 -32.71 16 13 C 0.08 3.09 2.91 46.11 0.13 3.22 16 14 H 0.03 1.34 7.37 -2.38 -0.02 1.32 16 15 C -0.11 -3.31 5.65 32.01 0.18 -3.13 16 16 C -0.11 -2.66 6.82 31.67 0.22 -2.44 16 17 C -0.13 -3.12 5.91 31.32 0.19 -2.93 16 18 C 0.07 2.20 2.61 31.32 0.08 2.28 16 19 H 0.08 2.38 7.04 -2.39 -0.02 2.36 16 20 O -0.39 -11.56 10.20 -148.98 -1.52 -13.08 16 21 C 0.40 8.86 6.27 113.37 0.71 9.57 16 22 F -0.22 -6.11 16.65 44.97 0.75 -5.36 16 23 F -0.21 -4.80 16.45 44.97 0.74 -4.06 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 3.02 6.07 -2.38 -0.01 3.00 16 26 H 0.03 1.46 5.74 -2.39 -0.01 1.44 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.33 14.65 7.82 -89.70 -0.70 13.95 16 29 H 0.06 2.04 6.63 -2.39 -0.02 2.02 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.84 7.85 -2.39 -0.02 1.82 16 35 H 0.21 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -63.83 288.05 2.70 -61.13 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.40 Total: 17.40 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 2.94 Total: -16.10 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.63 Total: -86.17 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.52 Total: -13.08 kcal Atomic # 9 Polarization: -10.92 SS G_CDS: 1.49 Total: -9.43 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.83 2.70 -61.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382262500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.317 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds