Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09004 * 110.01499 * 33.60762 * 13 12 2 15 15 C 1.54267 * 110.03082 * 272.16650 * 13 12 2 16 16 C 1.54892 * 104.19486 * 217.10242 * 15 13 12 17 17 C 1.54886 * 102.75022 * 37.94394 * 16 15 13 18 18 C 1.53873 * 110.03524 * 155.00208 * 13 12 2 19 19 H 1.09003 * 110.03080 * 359.97438 * 18 13 12 20 20 O 1.42906 * 110.03278 * 238.56975 * 18 13 12 21 21 C 1.42898 * 114.00181 * 149.99777 * 20 18 13 22 22 F 1.39907 * 109.46619 * 300.00055 * 21 20 18 23 23 F 1.39894 * 109.47419 * 59.99723 * 21 20 18 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 1.00895 * 111.00219 * 151.04779 * 12 2 1 29 29 H 1.08995 * 110.48812 * 335.78020 * 15 13 12 30 30 H 1.09005 * 110.48761 * 98.42762 * 15 13 12 31 31 H 1.09001 * 110.75946 * 279.63077 * 16 15 13 32 32 H 1.09003 * 110.91575 * 156.33422 * 16 15 13 33 33 H 1.08992 * 110.48922 * 203.37643 * 17 16 15 34 34 H 1.09001 * 110.48755 * 80.73196 * 17 16 15 35 35 H 1.08999 * 109.47453 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2755 0.9528 2.2864 15 6 3.4467 0.9422 2.3747 16 6 3.7915 1.0445 3.8813 17 6 3.2816 -0.3066 4.4412 18 6 1.9775 -0.5715 3.6607 19 1 1.8795 -1.6358 3.4469 20 8 0.8534 -0.1186 4.4179 21 6 0.2603 -1.1276 5.2379 22 9 -0.1823 -2.1824 4.4324 23 9 1.2079 -1.6035 6.1503 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7087 1.1612 -3.4844 28 1 2.9172 -1.1205 1.0287 29 1 4.1993 0.3535 1.8503 30 1 3.3630 1.9358 1.9342 31 1 3.2625 1.8782 4.3430 32 1 4.8671 1.1424 4.0286 33 1 3.0774 -0.2245 5.5086 34 1 4.0075 -1.0970 4.2504 35 1 -0.5858 -0.7047 5.7795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382262507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = -170.248482 kcal Electronic energy + Delta-G solvation = -19210.518794 eV Core-core repulsion = 15878.196727 eV Total energy + Delta-G solvation = -3332.322067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.94240 -47.04604 -39.01061 -36.30500 -34.51795 -32.06378 -28.78067 -28.03933 -26.05351 -25.17663 -24.52865 -20.70321 -20.33483 -19.62133 -18.03678 -17.66799 -17.45777 -16.41989 -15.53956 -15.12100 -14.73758 -13.97481 -13.93494 -13.73303 -13.47495 -13.30779 -12.77429 -12.55526 -12.41474 -12.30802 -11.83363 -11.41662 -11.38686 -10.94549 -10.84024 -10.71653 -10.53877 -10.38880 -10.27663 -10.16799 -10.10456 -9.73392 -8.83648 -8.47152 -7.28319 -6.02327 -4.08935 3.15865 3.31127 3.35693 3.38530 3.77528 4.40232 4.57288 4.70860 4.84224 4.97617 5.14280 5.28759 5.43265 5.52946 5.77485 5.84509 5.87337 5.94776 6.00156 6.09224 6.19690 6.45263 6.55877 6.91130 6.93933 7.17752 7.25483 7.53002 7.77860 7.90217 8.27685 8.38031 8.65567 9.01173 9.56916 11.03941 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.005788 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.912511 B = 4836.635912 C = 5265.192581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.091 3.909 14 H 0.087 0.913 15 C -0.147 4.147 16 C -0.119 4.119 17 C -0.144 4.144 18 C 0.080 3.920 19 H 0.086 0.914 20 O -0.376 6.376 21 C 0.403 3.597 22 F -0.205 7.205 23 F -0.215 7.215 24 H 0.031 0.969 25 H 0.005 0.995 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -0.823 14.981 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.313 5.313 13 C -0.021 4.021 14 H 0.105 0.895 15 C -0.187 4.187 16 C -0.157 4.157 17 C -0.182 4.182 18 C 0.023 3.977 19 H 0.104 0.896 20 O -0.298 6.298 21 C 0.310 3.690 22 F -0.187 7.187 23 F -0.197 7.197 24 H 0.050 0.950 25 H 0.024 0.976 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.842 -0.810 14.959 15.005 hybrid contribution 1.127 -0.255 -1.062 1.570 sum 1.970 -1.065 13.897 14.077 Atomic orbital electron populations 1.21730 0.97885 0.99379 0.99351 1.19089 0.92539 0.92400 0.85210 0.97905 1.21220 1.31574 1.12531 0.90487 0.92307 1.24906 0.95027 0.94986 0.99006 1.69886 1.36519 1.22863 1.23567 0.86588 0.79041 0.79807 0.82110 1.20201 1.21300 1.20356 1.60717 1.32174 1.32504 1.05899 1.22127 0.96629 0.93527 0.89802 0.89467 1.23085 0.98017 1.01611 0.95965 1.22420 1.00212 0.97068 0.96016 1.22904 0.96894 0.98374 0.99983 1.23141 0.83347 1.00219 0.90968 0.89595 1.88416 1.47492 1.35298 1.58548 1.23091 0.87634 0.78069 0.80160 1.93088 1.89412 1.60928 1.75258 1.93036 1.68830 1.89775 1.68042 0.95012 0.97632 0.90119 0.92865 0.84939 0.91183 0.91349 0.91494 0.91874 0.90926 0.90735 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.18 37.16 0.34 -2.84 16 2 C 0.21 5.44 2.44 -68.87 -0.17 5.27 16 3 H 0.00 0.09 7.77 -51.93 -0.40 -0.31 16 4 C -0.52 -14.23 8.59 -34.44 -0.30 -14.53 16 5 H 0.06 1.58 7.62 -52.48 -0.40 1.18 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.68 -14.56 5.97 -99.78 -0.60 -15.15 16 13 C 0.09 1.65 2.82 -66.59 -0.19 1.47 16 14 H 0.09 1.76 6.98 -51.93 -0.36 1.39 16 15 C -0.15 -2.35 6.36 -25.07 -0.16 -2.51 16 16 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 17 C -0.14 -1.92 6.24 -25.07 -0.16 -2.07 16 18 C 0.08 1.28 2.91 -25.61 -0.07 1.20 16 19 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 20 O -0.38 -5.69 10.19 -35.23 -0.36 -6.05 16 21 C 0.40 4.94 6.26 101.05 0.63 5.57 16 22 F -0.20 -3.06 16.66 2.25 0.04 -3.03 16 23 F -0.21 -2.71 15.99 2.25 0.04 -2.67 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.00 0.11 7.46 -51.93 -0.39 -0.28 16 26 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 6.87 7.59 -39.29 -0.30 6.57 16 29 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.92 7.17 -51.93 -0.37 0.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.16 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -29.27 290.40 -6.20 -35.47 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.97 Total: 4.16 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.33 Total: -8.53 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.03 Total: -39.99 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.07 Total: -5.70 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.27 -6.20 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382262507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.780 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds