Wall clock time and date at job start Mon Mar 30 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09004 * 110.01499 * 33.60762 * 13 12 2 15 15 C 1.54267 * 110.03082 * 272.16650 * 13 12 2 16 16 C 1.54892 * 104.19486 * 217.10242 * 15 13 12 17 17 C 1.54886 * 102.75022 * 37.94394 * 16 15 13 18 18 C 1.53873 * 110.03524 * 155.00208 * 13 12 2 19 19 H 1.09003 * 110.03080 * 359.97438 * 18 13 12 20 20 O 1.42906 * 110.03278 * 238.56975 * 18 13 12 21 21 C 1.42898 * 114.00181 * 149.99777 * 20 18 13 22 22 F 1.39907 * 109.46619 * 300.00055 * 21 20 18 23 23 F 1.39894 * 109.47419 * 59.99723 * 21 20 18 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 1.00895 * 111.00219 * 151.04779 * 12 2 1 29 29 H 1.08995 * 110.48812 * 335.78020 * 15 13 12 30 30 H 1.09005 * 110.48761 * 98.42762 * 15 13 12 31 31 H 1.09001 * 110.75946 * 279.63077 * 16 15 13 32 32 H 1.09003 * 110.91575 * 156.33422 * 16 15 13 33 33 H 1.08992 * 110.48922 * 203.37643 * 17 16 15 34 34 H 1.09001 * 110.48755 * 80.73196 * 17 16 15 35 35 H 1.08999 * 109.47453 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2755 0.9528 2.2864 15 6 3.4467 0.9422 2.3747 16 6 3.7915 1.0445 3.8813 17 6 3.2816 -0.3066 4.4412 18 6 1.9775 -0.5715 3.6607 19 1 1.8795 -1.6358 3.4469 20 8 0.8534 -0.1186 4.4179 21 6 0.2603 -1.1276 5.2379 22 9 -0.1823 -2.1824 4.4324 23 9 1.2079 -1.6035 6.1503 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7087 1.1612 -3.4844 28 1 2.9172 -1.1205 1.0287 29 1 4.1993 0.3535 1.8503 30 1 3.3630 1.9358 1.9342 31 1 3.2625 1.8782 4.3430 32 1 4.8671 1.1424 4.0286 33 1 3.0774 -0.2245 5.5086 34 1 4.0075 -1.0970 4.2504 35 1 -0.5858 -0.7047 5.7795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382262507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:19 Heat of formation + Delta-G solvation = -189.605185 kcal Electronic energy + Delta-G solvation = -19211.358164 eV Core-core repulsion = 15878.196727 eV Total energy + Delta-G solvation = -3333.161437 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.96640 -48.08334 -40.30659 -37.74917 -36.15866 -33.95717 -30.57082 -29.22693 -27.67334 -26.98926 -25.80477 -22.20904 -21.71057 -21.20953 -19.16670 -18.96122 -18.52549 -18.15887 -17.03569 -16.51523 -16.40182 -15.56077 -15.16273 -15.00623 -14.86407 -14.46492 -14.38437 -13.98316 -13.72606 -13.50730 -13.32203 -13.21902 -12.81219 -12.72807 -12.54616 -12.31652 -12.19502 -12.00409 -11.94856 -11.59613 -11.56177 -11.24815 -10.89306 -10.56915 -9.04598 -8.13498 -6.27836 1.42389 1.44461 1.51980 2.11428 2.41805 2.78564 3.15152 3.43432 3.55039 3.81716 3.86069 3.94184 4.05398 4.27412 4.48776 4.56869 4.57907 4.73090 4.80946 4.83397 4.96480 5.05756 5.11779 5.17522 5.22715 5.34579 5.47999 5.65483 5.74943 5.84999 6.20387 6.46139 6.75502 6.99373 7.42545 8.92213 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.005788 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.912511 B = 4836.635912 C = 5265.192581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.222 3.778 3 H -0.026 1.026 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.683 5.683 13 C 0.086 3.914 14 H 0.063 0.937 15 C -0.145 4.145 16 C -0.108 4.108 17 C -0.135 4.135 18 C 0.085 3.915 19 H 0.071 0.929 20 O -0.390 6.390 21 C 0.397 3.603 22 F -0.223 7.223 23 F -0.215 7.215 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.336 0.664 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -1.313 16.086 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 H -0.008 1.008 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.314 5.314 13 C -0.025 4.025 14 H 0.081 0.919 15 C -0.185 4.185 16 C -0.146 4.146 17 C -0.173 4.173 18 C 0.028 3.972 19 H 0.089 0.911 20 O -0.312 6.312 21 C 0.307 3.693 22 F -0.205 7.205 23 F -0.198 7.198 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.709 -1.305 16.092 16.235 hybrid contribution 0.817 -0.088 -1.352 1.582 sum 2.526 -1.392 14.740 15.020 Atomic orbital electron populations 1.21557 0.98182 0.98592 0.98800 1.18839 0.92264 0.90988 0.86538 1.00813 1.21554 1.31831 1.12758 0.91586 0.92202 1.25728 0.95126 0.95650 1.02036 1.70015 1.37367 1.24070 1.24260 0.85542 0.78794 0.78574 0.78282 1.19797 1.20921 1.19426 1.60621 1.32485 1.32978 1.05273 1.22185 0.97268 0.93139 0.89910 0.91881 1.23001 0.96503 1.00528 0.98439 1.22382 1.01818 0.97144 0.93237 1.22873 0.95406 0.98752 1.00229 1.22943 0.85219 0.98654 0.90431 0.91107 1.88391 1.47397 1.36520 1.58859 1.23868 0.88559 0.77235 0.79683 1.93053 1.89563 1.61915 1.76010 1.93029 1.69167 1.89786 1.67774 0.95687 0.96460 0.92315 0.92804 0.84575 0.91326 0.92471 0.90978 0.89453 0.89605 0.89665 0.77351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.18 71.98 0.66 -5.22 16 2 C 0.22 11.51 2.44 44.17 0.11 11.62 16 3 H -0.03 -1.46 7.77 -2.39 -0.02 -1.48 16 4 C -0.54 -29.85 8.59 25.60 0.22 -29.63 16 5 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.33 11.32 21.44 0.24 -53.08 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.68 -29.53 5.97 -469.59 -2.80 -32.33 16 13 C 0.09 3.14 2.82 45.64 0.13 3.27 16 14 H 0.06 2.60 6.98 -2.39 -0.02 2.58 16 15 C -0.15 -4.55 6.36 31.67 0.20 -4.35 16 16 C -0.11 -2.57 6.91 31.88 0.22 -2.35 16 17 C -0.13 -3.26 6.24 31.67 0.20 -3.06 16 18 C 0.08 2.61 2.91 31.32 0.09 2.70 16 19 H 0.07 2.39 7.01 -2.39 -0.02 2.37 16 20 O -0.39 -11.24 10.19 -148.98 -1.52 -12.76 16 21 C 0.40 8.91 6.26 113.37 0.71 9.62 16 22 F -0.22 -6.44 16.66 44.97 0.75 -5.69 16 23 F -0.22 -4.92 15.99 44.97 0.72 -4.21 16 24 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.02 0.80 7.46 -2.39 -0.02 0.79 16 26 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.34 13.97 7.59 -89.70 -0.68 13.29 16 29 H 0.07 2.16 7.56 -2.39 -0.02 2.14 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.89 7.17 -2.39 -0.02 1.87 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.21 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -63.14 290.40 2.81 -60.33 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.41 Total: 18.27 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 2.99 Total: -16.17 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.56 Total: -85.41 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.52 Total: -12.76 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 1.47 Total: -9.90 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -63.14 2.81 -60.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382262507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.272 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds