Wall clock time and date at job start Mon Mar 30 2020 07:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 C 1.38264 * 119.94710 * 269.72785 * 15 14 13 17 17 C 1.38141 * 120.05663 * 179.72910 * 16 15 14 18 18 C 1.38744 * 119.94145 * 0.56624 * 17 16 15 19 19 O 1.35899 * 120.05593 * 179.68397 * 18 17 16 20 20 C 1.38733 * 119.88894 * 359.70842 * 18 17 16 21 21 C 1.38148 * 119.94226 * 359.97438 * 20 18 17 22 22 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 24 24 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 25 25 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 26 26 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 27 27 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 28 28 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 29 29 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 30 30 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 31 31 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 32 32 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 33 33 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 34 34 H 1.07997 * 119.97123 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.03365 * 180.24888 * 17 16 15 36 36 H 0.96699 * 113.99641 * 270.02281 * 19 18 17 37 37 H 1.07996 * 120.02849 * 179.97438 * 20 18 17 38 38 H 1.08000 * 119.97048 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 6 1.8763 -9.8484 0.0012 16 6 1.5206 -10.4393 1.1995 17 6 0.7934 -11.6138 1.2027 18 6 0.4300 -12.2066 0.0021 19 8 -0.2799 -13.3655 0.0026 20 6 0.7930 -11.6147 -1.1989 21 6 1.5146 -10.4367 -1.1967 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 0.8538 -5.0446 -0.8902 28 1 0.8532 -5.0450 0.8897 29 1 3.1005 -6.0923 0.8910 30 1 3.1017 -6.0922 -0.8890 31 1 1.1037 -7.4725 -0.7810 32 1 3.2923 -8.5229 -0.8894 33 1 3.2924 -8.5228 0.8906 34 1 1.8081 -9.9802 2.1337 35 1 0.5123 -12.0729 2.1390 36 1 0.2680 -14.1623 0.0030 37 1 0.5117 -12.0744 -2.1348 38 1 1.7978 -9.9757 -2.1314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385206103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:56 Heat of formation + Delta-G solvation = -44.200682 kcal Electronic energy + Delta-G solvation = -16633.828327 eV Core-core repulsion = 13861.201633 eV Total energy + Delta-G solvation = -2772.626695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01941 -37.61584 -36.24510 -34.13151 -32.30745 -31.24484 -30.50680 -28.01879 -25.31622 -23.67129 -23.05576 -21.54739 -21.32548 -19.96178 -18.69545 -16.56420 -16.17364 -16.05455 -15.59783 -15.32986 -14.72628 -14.42610 -14.32484 -13.89518 -13.67840 -13.10917 -12.55229 -12.47782 -12.23355 -11.94860 -11.79695 -11.50963 -11.23477 -10.96913 -10.72650 -10.53326 -10.50916 -10.40873 -9.60809 -9.25084 -9.23590 -9.01725 -8.79381 -8.37862 -8.30379 -5.95717 -3.98082 0.94124 1.11137 3.32856 3.35355 3.39567 3.42075 3.91611 4.32642 4.49543 4.58366 4.66915 4.74316 5.08089 5.12636 5.35166 5.39560 5.40619 5.48310 5.56890 5.62826 5.77445 5.91181 6.02447 6.16039 6.16842 6.24874 6.37771 6.52850 6.55313 6.84253 6.96658 7.03184 7.23904 7.34515 7.38492 7.72956 7.89237 8.05404 8.48000 9.09293 9.65571 11.15615 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.062480 B = 0.002584 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.034270 B =10834.384582 C =10953.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.686 5.686 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.081 4.081 17 C -0.146 4.146 18 C 0.099 3.901 19 O -0.501 6.501 20 C -0.146 4.146 21 C -0.098 4.098 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.341 0.659 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.388 0.612 37 H 0.127 0.873 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 -25.748 -0.703 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.317 5.317 14 C -0.032 4.032 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.165 4.165 18 C 0.055 3.945 19 O -0.311 6.311 20 C -0.164 4.164 21 C -0.117 4.117 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.159 0.841 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.244 0.756 37 H 0.145 0.855 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.723 -25.243 -0.017 25.516 hybrid contribution 1.068 0.624 -0.944 1.555 sum 4.790 -24.620 -0.961 25.100 Atomic orbital electron populations 1.69961 1.06046 1.26632 1.50930 1.25039 0.94854 0.99231 0.95440 0.86664 0.79578 0.83211 0.78571 1.20298 1.21306 1.20257 1.21252 0.92969 0.91235 1.50450 0.92831 1.19091 0.94032 0.91326 0.97168 1.21587 0.99078 0.93943 1.00063 1.21641 0.97880 0.93793 1.02068 1.22106 0.96269 0.88369 1.00205 1.60568 1.19603 1.01265 1.50278 1.20882 0.93431 0.87552 1.01379 1.19893 0.99424 0.96316 0.93090 1.20960 0.96623 0.94267 0.98107 1.21438 0.99592 0.97619 0.97811 1.18504 0.94667 0.88892 0.92448 1.84839 1.35250 1.14444 1.96549 1.21376 0.99720 0.97532 0.97810 1.20970 0.97760 0.95112 0.97856 0.92988 0.96745 0.96591 0.93429 0.93688 0.92731 0.91609 0.91167 0.95481 0.84119 0.94437 0.90131 0.85303 0.85445 0.75644 0.85526 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.15 16 12 C 0.06 0.83 5.69 -3.82 -0.02 0.80 16 13 N -0.69 -8.62 6.49 -115.05 -0.75 -9.37 16 14 C 0.10 1.00 5.81 -4.97 -0.03 0.97 16 15 C -0.09 -0.87 5.39 -104.60 -0.56 -1.44 16 16 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 17 C -0.15 -1.38 9.99 -39.43 -0.39 -1.77 16 18 C 0.10 0.95 6.71 -39.21 -0.26 0.69 16 19 O -0.50 -4.22 13.50 -19.42 -0.26 -4.48 16 20 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 21 C -0.10 -0.92 9.69 -39.60 -0.38 -1.30 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.34 4.15 8.72 -39.29 -0.34 3.81 16 32 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.39 1.29 9.06 45.56 0.41 1.70 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -32.54 324.63 -9.05 -41.59 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.38 Total: 0.16 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.27 Total: -22.98 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.01 Total: -36.15 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.26 Total: -4.48 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.54 -9.05 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.610 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds