Wall clock time and date at job start Mon Mar 30 2020 07:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 C 1.38264 * 119.94710 * 269.72785 * 15 14 13 17 17 C 1.38141 * 120.05663 * 179.72910 * 16 15 14 18 18 C 1.38744 * 119.94145 * 0.56624 * 17 16 15 19 19 O 1.35899 * 120.05593 * 179.68397 * 18 17 16 20 20 C 1.38733 * 119.88894 * 359.70842 * 18 17 16 21 21 C 1.38148 * 119.94226 * 359.97438 * 20 18 17 22 22 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 24 24 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 25 25 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 26 26 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 27 27 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 28 28 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 29 29 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 30 30 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 31 31 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 32 32 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 33 33 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 34 34 H 1.07997 * 119.97123 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.03365 * 180.24888 * 17 16 15 36 36 H 0.96699 * 113.99641 * 270.02281 * 19 18 17 37 37 H 1.07996 * 120.02849 * 179.97438 * 20 18 17 38 38 H 1.08000 * 119.97048 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 6 1.8763 -9.8484 0.0012 16 6 1.5206 -10.4393 1.1995 17 6 0.7934 -11.6138 1.2027 18 6 0.4300 -12.2066 0.0021 19 8 -0.2799 -13.3655 0.0026 20 6 0.7930 -11.6147 -1.1989 21 6 1.5146 -10.4367 -1.1967 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 0.8538 -5.0446 -0.8902 28 1 0.8532 -5.0450 0.8897 29 1 3.1005 -6.0923 0.8910 30 1 3.1017 -6.0922 -0.8890 31 1 1.1037 -7.4725 -0.7810 32 1 3.2923 -8.5229 -0.8894 33 1 3.2924 -8.5228 0.8906 34 1 1.8081 -9.9802 2.1337 35 1 0.5123 -12.0729 2.1390 36 1 0.2680 -14.1623 0.0030 37 1 0.5117 -12.0744 -2.1348 38 1 1.7978 -9.9757 -2.1314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385206103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:56 Heat of formation + Delta-G solvation = -66.159772 kcal Electronic energy + Delta-G solvation = -16634.780545 eV Core-core repulsion = 13861.201633 eV Total energy + Delta-G solvation = -2773.578912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70223 -38.42740 -37.33056 -35.79865 -34.09807 -31.92714 -31.67457 -29.53605 -26.71935 -25.05069 -23.75075 -22.85099 -22.31132 -21.61639 -19.33989 -18.44046 -17.36370 -16.82267 -16.54401 -16.44467 -16.22908 -15.66158 -15.47648 -14.85159 -14.47307 -14.36507 -14.10744 -13.68182 -13.57092 -13.15289 -12.99481 -12.79348 -12.64549 -12.43874 -12.18126 -12.14043 -12.07066 -11.37911 -11.35409 -11.30450 -10.99749 -10.54632 -9.93114 -9.57137 -9.28842 -8.19351 -6.31118 0.24174 0.41644 1.39744 1.43384 1.51353 2.41317 2.62913 3.13182 3.29312 3.41178 3.86418 3.92614 4.08344 4.15074 4.21315 4.40210 4.44694 4.55947 4.63561 4.73179 4.75229 4.85745 4.94283 4.96856 5.09798 5.24792 5.28261 5.33951 5.37015 5.47234 5.55747 5.66322 5.78715 5.87373 5.90325 6.07294 6.26090 6.42411 6.86604 6.86770 7.38207 8.92410 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.062480 B = 0.002584 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.034270 B =10834.384582 C =10953.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.695 5.695 14 C 0.100 3.900 15 C -0.099 4.099 16 C -0.090 4.090 17 C -0.156 4.156 18 C 0.095 3.905 19 O -0.512 6.512 20 C -0.154 4.154 21 C -0.101 4.101 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.343 0.657 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.410 0.590 37 H 0.140 0.860 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -26.311 -0.982 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.326 5.326 14 C -0.028 4.028 15 C -0.100 4.100 16 C -0.108 4.108 17 C -0.175 4.175 18 C 0.050 3.950 19 O -0.326 6.326 20 C -0.173 4.173 21 C -0.120 4.120 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.269 0.731 37 H 0.158 0.842 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.127 -25.844 -0.296 26.349 hybrid contribution 0.575 0.712 -0.856 1.253 sum 5.702 -25.132 -1.152 25.797 Atomic orbital electron populations 1.70106 1.07902 1.27840 1.51731 1.26048 0.95815 1.03569 0.94756 0.85470 0.78241 0.77896 0.79259 1.19044 1.20854 1.19070 1.21726 0.93606 0.92499 1.50486 0.92073 1.19032 0.94559 0.93402 0.94541 1.21392 0.97938 0.93548 1.00558 1.21470 0.98115 0.93505 1.01373 1.21869 0.95216 0.87761 1.00889 1.60511 1.20160 1.01302 1.50610 1.20877 0.93129 0.86707 1.02069 1.19932 1.00107 0.96434 0.93511 1.21115 0.96776 0.94545 0.98408 1.21616 0.99715 0.97673 0.98452 1.18657 0.94318 0.89345 0.92648 1.84778 1.36138 1.15132 1.96516 1.21587 0.99715 0.97603 0.98380 1.21162 0.97460 0.95135 0.98217 0.92781 0.99299 0.99372 0.92961 0.92970 0.92977 0.92839 0.90759 0.94494 0.83943 0.93352 0.89749 0.84787 0.84347 0.73149 0.84184 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.11 -3.64 5.47 30.59 0.17 -3.47 16 12 C 0.07 1.88 5.69 86.30 0.49 2.37 16 13 N -0.69 -16.43 6.49 -517.91 -3.36 -19.79 16 14 C 0.10 1.90 5.81 85.56 0.50 2.40 16 15 C -0.10 -1.87 5.39 -19.85 -0.11 -1.98 16 16 C -0.09 -1.67 9.69 22.25 0.22 -1.46 16 17 C -0.16 -2.78 9.99 22.37 0.22 -2.55 16 18 C 0.09 1.69 6.71 22.51 0.15 1.84 16 19 O -0.51 -7.87 13.50 -92.42 -1.25 -9.12 16 20 C -0.15 -2.62 9.99 22.37 0.22 -2.39 16 21 C -0.10 -1.74 9.69 22.26 0.22 -1.52 16 22 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.34 7.90 8.72 -89.70 -0.78 7.12 16 32 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.08 1.53 8.08 -2.38 -0.02 1.51 16 34 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.41 2.04 9.06 -74.06 -0.67 1.37 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -69.40 324.63 0.37 -69.03 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -0.41 Total: 11.71 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 3.08 Total: -40.64 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.08 Total: -77.90 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.25 Total: -9.12 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.40 0.37 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.874 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds