Wall clock time and date at job start Mon Mar 30 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48502 * 109.47124 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.46980 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47086 * 150.00069 * 3 2 1 7 7 C 1.37873 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47153 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00210 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47175 * 180.02562 * 14 13 12 16 16 C 1.38158 * 120.02768 * 260.00115 * 15 14 13 17 17 C 1.38250 * 120.05410 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.11168 * 359.97438 * 17 16 15 19 19 C 1.38125 * 120.05855 * 359.97438 * 18 17 16 20 20 C 1.38711 * 120.02445 * 79.96176 * 15 14 13 21 21 O 1.35901 * 120.05828 * 0.03985 * 20 15 14 22 22 H 0.96991 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47060 * 60.00303 * 9 7 2 24 24 H 1.08997 * 109.46963 * 299.99963 * 9 7 2 25 25 H 1.08998 * 109.47129 * 59.99580 * 10 9 7 26 26 H 1.09005 * 109.46883 * 299.99923 * 10 9 7 27 27 H 1.09004 * 109.46841 * 59.99938 * 11 10 9 28 28 H 1.08997 * 109.47011 * 300.00181 * 11 10 9 29 29 H 1.09004 * 109.46991 * 60.00367 * 12 11 10 30 30 H 1.08997 * 109.47462 * 300.00733 * 12 11 10 31 31 H 1.00904 * 110.99739 * 56.05326 * 13 12 11 32 32 H 1.09000 * 109.46686 * 60.00498 * 14 13 12 33 33 H 1.09002 * 109.47344 * 300.00553 * 14 13 12 34 34 H 1.08004 * 119.97750 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.94133 * 179.97438 * 17 16 15 36 36 H 1.07997 * 119.97275 * 180.02562 * 18 17 16 37 37 H 1.07994 * 120.03307 * 179.73079 * 19 18 17 38 38 H 0.96701 * 113.99785 * 269.95941 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4748 -6.1499 0.0005 13 7 1.7404 -7.4222 0.0018 14 6 2.6649 -8.5638 0.0018 15 6 1.8769 -9.8484 0.0025 16 6 1.6928 -10.5459 1.1807 17 6 0.9704 -11.7247 1.1818 18 6 0.4300 -12.2083 0.0045 19 6 0.6103 -11.5141 -1.1760 20 6 1.3351 -10.3309 -1.1798 21 8 1.5148 -9.6465 -2.3401 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 0.8535 -5.0451 -0.8886 28 1 0.8541 -5.0446 0.8914 29 1 3.1020 -6.0921 0.8901 30 1 3.1009 -6.0922 -0.8898 31 1 1.1032 -7.4726 -0.7790 32 1 3.2934 -8.5222 0.8914 33 1 3.2923 -8.5233 -0.8886 34 1 2.1142 -10.1705 2.1016 35 1 0.8280 -12.2687 2.1039 36 1 -0.1343 -13.1291 0.0080 37 1 0.1917 -11.8944 -2.0960 38 1 0.8253 -8.9935 -2.5224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385286785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:00 Heat of formation + Delta-G solvation = -43.789055 kcal Electronic energy + Delta-G solvation = -16969.079212 eV Core-core repulsion = 14196.470367 eV Total energy + Delta-G solvation = -2772.608845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14708 -36.85894 -36.69077 -34.30254 -32.51901 -31.16480 -30.02973 -28.19966 -25.51092 -23.72106 -22.84048 -21.58692 -21.30834 -19.97353 -18.47879 -16.68187 -16.18402 -16.16598 -15.57405 -15.27591 -14.76327 -14.41067 -14.33512 -14.00500 -13.62075 -12.73168 -12.53778 -12.31620 -12.25607 -12.18953 -11.74581 -11.61594 -11.31103 -10.98634 -10.62938 -10.54967 -10.47922 -10.41339 -9.61870 -9.27793 -9.13455 -8.99046 -8.83687 -8.38575 -8.31340 -5.96692 -3.98883 0.98579 1.09244 3.33553 3.34434 3.39604 3.43249 3.99914 4.29299 4.48979 4.60530 4.64445 4.79060 5.05383 5.19573 5.35144 5.38782 5.42760 5.46298 5.58474 5.67371 5.76983 5.90757 6.09080 6.16069 6.21461 6.24153 6.31825 6.51394 6.56577 6.83097 6.95567 7.01633 7.22852 7.31670 7.43159 7.72319 7.88187 8.04493 8.47336 9.08701 9.64963 11.14712 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.002875 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.689570 B = 9735.895509 C = 9805.199081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.058 3.942 13 N -0.683 5.683 14 C 0.098 3.902 15 C -0.102 4.102 16 C -0.087 4.087 17 C -0.130 4.130 18 C -0.108 4.108 19 C -0.147 4.147 20 C 0.109 3.891 21 O -0.499 6.499 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.335 0.665 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -24.069 -0.466 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.070 4.070 13 N -0.314 5.314 14 C -0.031 4.031 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.148 4.148 18 C -0.126 4.126 19 C -0.165 4.165 20 C 0.064 3.936 21 O -0.309 6.309 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.972 -24.287 0.171 24.367 hybrid contribution 0.279 1.260 -0.942 1.598 sum 2.250 -23.026 -0.771 23.149 Atomic orbital electron populations 1.69967 1.06048 1.26521 1.51063 1.25035 0.94848 0.99236 0.95433 0.86609 0.79861 0.83555 0.78063 1.20704 1.21227 1.19901 1.21294 0.93025 0.91226 1.50290 0.92770 1.19091 0.94025 0.91344 0.97142 1.21591 0.99090 0.93913 1.00116 1.21636 0.97859 0.93834 1.01970 1.22110 0.96295 0.88262 1.00333 1.60620 1.19647 1.01423 1.49678 1.20796 0.93570 0.87109 1.01601 1.20178 1.00388 0.97120 0.92580 1.21000 0.97833 0.94455 0.97249 1.21182 0.98665 0.96646 0.98311 1.21027 0.99570 0.99733 0.92264 1.21402 0.99978 0.96218 0.98928 1.18370 0.97500 0.92791 0.84977 1.84800 1.52428 1.55683 1.37975 0.93049 0.96758 0.96600 0.93420 0.93646 0.92794 0.91636 0.91132 0.95354 0.84830 0.90200 0.93730 0.85437 0.85772 0.85763 0.85538 0.75361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -1.96 5.47 -26.73 -0.15 -2.11 16 12 C 0.06 0.83 5.69 -3.83 -0.02 0.81 16 13 N -0.68 -8.57 6.49 -115.06 -0.75 -9.31 16 14 C 0.10 1.11 5.48 -4.97 -0.03 1.08 16 15 C -0.10 -1.10 5.41 -104.48 -0.56 -1.67 16 16 C -0.09 -0.85 9.67 -39.61 -0.38 -1.23 16 17 C -0.13 -1.11 10.04 -39.56 -0.40 -1.50 16 18 C -0.11 -0.89 10.04 -39.61 -0.40 -1.29 16 19 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 20 C 0.11 1.14 6.67 -39.21 -0.26 0.88 16 21 O -0.50 -4.99 12.69 -19.43 -0.25 -5.23 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.33 3.86 8.41 -39.29 -0.33 3.53 16 32 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 33 H 0.04 0.53 7.85 -51.93 -0.41 0.12 16 34 H 0.13 1.09 8.04 -52.48 -0.42 0.67 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.39 2.48 8.80 45.56 0.40 2.88 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -32.21 322.93 -9.06 -41.27 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.37 Total: 0.77 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.28 Total: -22.61 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.01 Total: -35.98 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.25 Total: -5.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.21 -9.06 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385286785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.524 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds