Wall clock time and date at job start Mon Mar 30 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48502 * 109.47124 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.46980 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47086 * 150.00069 * 3 2 1 7 7 C 1.37873 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47153 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00210 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47175 * 180.02562 * 14 13 12 16 16 C 1.38158 * 120.02768 * 260.00115 * 15 14 13 17 17 C 1.38250 * 120.05410 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.11168 * 359.97438 * 17 16 15 19 19 C 1.38125 * 120.05855 * 359.97438 * 18 17 16 20 20 C 1.38711 * 120.02445 * 79.96176 * 15 14 13 21 21 O 1.35901 * 120.05828 * 0.03985 * 20 15 14 22 22 H 0.96991 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47060 * 60.00303 * 9 7 2 24 24 H 1.08997 * 109.46963 * 299.99963 * 9 7 2 25 25 H 1.08998 * 109.47129 * 59.99580 * 10 9 7 26 26 H 1.09005 * 109.46883 * 299.99923 * 10 9 7 27 27 H 1.09004 * 109.46841 * 59.99938 * 11 10 9 28 28 H 1.08997 * 109.47011 * 300.00181 * 11 10 9 29 29 H 1.09004 * 109.46991 * 60.00367 * 12 11 10 30 30 H 1.08997 * 109.47462 * 300.00733 * 12 11 10 31 31 H 1.00904 * 110.99739 * 56.05326 * 13 12 11 32 32 H 1.09000 * 109.46686 * 60.00498 * 14 13 12 33 33 H 1.09002 * 109.47344 * 300.00553 * 14 13 12 34 34 H 1.08004 * 119.97750 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.94133 * 179.97438 * 17 16 15 36 36 H 1.07997 * 119.97275 * 180.02562 * 18 17 16 37 37 H 1.07994 * 120.03307 * 179.73079 * 19 18 17 38 38 H 0.96701 * 113.99785 * 269.95941 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4748 -6.1499 0.0005 13 7 1.7404 -7.4222 0.0018 14 6 2.6649 -8.5638 0.0018 15 6 1.8769 -9.8484 0.0025 16 6 1.6928 -10.5459 1.1807 17 6 0.9704 -11.7247 1.1818 18 6 0.4300 -12.2083 0.0045 19 6 0.6103 -11.5141 -1.1760 20 6 1.3351 -10.3309 -1.1798 21 8 1.5148 -9.6465 -2.3401 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 0.8535 -5.0451 -0.8886 28 1 0.8541 -5.0446 0.8914 29 1 3.1020 -6.0921 0.8901 30 1 3.1009 -6.0922 -0.8898 31 1 1.1032 -7.4726 -0.7790 32 1 3.2934 -8.5222 0.8914 33 1 3.2923 -8.5233 -0.8886 34 1 2.1142 -10.1705 2.1016 35 1 0.8280 -12.2687 2.1039 36 1 -0.1343 -13.1291 0.0080 37 1 0.1917 -11.8944 -2.0960 38 1 0.8253 -8.9935 -2.5224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385286785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:00 Heat of formation + Delta-G solvation = -65.332622 kcal Electronic energy + Delta-G solvation = -16970.013411 eV Core-core repulsion = 14196.470367 eV Total energy + Delta-G solvation = -2773.543044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86172 -37.86970 -37.55783 -35.98005 -34.25900 -32.32830 -30.80199 -29.73125 -26.91088 -25.18324 -23.54075 -22.87577 -22.34760 -21.62391 -19.18666 -18.44553 -17.46630 -16.96384 -16.54174 -16.50454 -16.17027 -15.66802 -15.54070 -14.86769 -14.65190 -14.35401 -13.90483 -13.64846 -13.29630 -13.14932 -12.95826 -12.87433 -12.82564 -12.45009 -12.23975 -12.16128 -12.08785 -11.37558 -11.36092 -11.28666 -10.99646 -10.55358 -9.85290 -9.58083 -9.34693 -8.19973 -6.31440 0.29208 0.39857 1.39523 1.41200 1.52433 2.40889 2.65224 3.12750 3.29253 3.35815 3.82946 3.92392 4.10726 4.17752 4.22834 4.37977 4.52111 4.55478 4.60489 4.68429 4.74187 4.83915 4.92701 4.97594 5.07693 5.23598 5.27178 5.35356 5.43721 5.54793 5.55152 5.60551 5.78263 5.86876 5.91804 6.01453 6.25926 6.37152 6.78252 6.86266 7.37931 8.91974 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.002875 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.689570 B = 9735.895509 C = 9805.199081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.104 4.104 12 C 0.070 3.930 13 N -0.686 5.686 14 C 0.105 3.895 15 C -0.121 4.121 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.107 4.107 19 C -0.157 4.157 20 C 0.095 3.905 21 O -0.511 6.511 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.011 1.011 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.340 0.660 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -24.931 -0.301 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.059 4.059 13 N -0.317 5.317 14 C -0.024 4.024 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.151 4.151 18 C -0.125 4.125 19 C -0.175 4.175 20 C 0.050 3.950 21 O -0.323 6.323 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.158 0.842 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.753 -25.162 0.330 25.314 hybrid contribution -0.026 1.473 -0.996 1.778 sum 2.727 -23.689 -0.666 23.855 Atomic orbital electron populations 1.70101 1.07845 1.27780 1.51778 1.26021 0.95805 1.03478 0.94747 0.85434 0.78659 0.78339 0.78541 1.19690 1.20666 1.18720 1.21754 0.93576 0.92564 1.50423 0.92213 1.19021 0.94508 0.93260 0.94632 1.21400 0.97992 0.93664 1.00480 1.21453 0.97996 0.93235 1.01549 1.21879 0.95362 0.87895 1.00729 1.60565 1.19885 1.01123 1.50111 1.20728 0.93329 0.86930 1.01390 1.20217 1.01418 0.97260 0.93333 1.21215 0.98174 0.95043 0.97212 1.21500 0.97895 0.96254 0.99464 1.21387 0.99006 1.00336 0.91741 1.21645 0.99930 0.95953 1.00013 1.18559 0.98006 0.93454 0.84962 1.84758 1.53376 1.56210 1.37946 0.92759 0.99173 0.99240 0.93075 0.93104 0.92725 0.92606 0.90865 0.94857 0.84239 0.89862 0.94398 0.84693 0.83466 0.83201 0.84320 0.73901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.04 5.15 30.59 0.16 -3.88 16 11 C -0.10 -3.54 5.47 30.59 0.17 -3.37 16 12 C 0.07 1.91 5.69 86.30 0.49 2.40 16 13 N -0.69 -16.59 6.49 -517.93 -3.36 -19.95 16 14 C 0.10 2.28 5.48 85.56 0.47 2.75 16 15 C -0.12 -2.53 5.41 -19.77 -0.11 -2.64 16 16 C -0.10 -1.79 9.67 22.25 0.22 -1.57 16 17 C -0.13 -1.99 10.04 22.28 0.22 -1.77 16 18 C -0.11 -1.53 10.04 22.25 0.22 -1.31 16 19 C -0.16 -2.68 9.99 22.37 0.22 -2.46 16 20 C 0.09 1.92 6.67 22.51 0.15 2.07 16 21 O -0.51 -9.92 12.69 -92.44 -1.17 -11.09 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.34 7.58 8.41 -89.69 -0.75 6.83 16 32 H 0.08 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 34 H 0.14 2.14 8.04 -2.91 -0.02 2.12 16 35 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.40 4.94 8.80 -74.06 -0.65 4.29 16 Total: -1.00 -68.75 322.93 0.47 -68.28 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.37 Total: 13.24 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.06 Total: -39.67 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -3.08 Total: -77.67 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.17 Total: -11.09 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.75 0.47 -68.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385286785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.946 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds